Table 2. Significance regions and candidate genes for productive traits.
| Traits | SSC | Position (Mb) | gVar (%)1) | nSNP | Candidate genes |
|---|---|---|---|---|---|
| AGE (days) | 1 | 159.24–159.88 | 2.05 | 9 | RELCH, PIGN, RNF152, CDH20 |
| ADG (g) | 1 | 159.24–159.88 | 2.22 | 9 | RELCH, PIGN, RNF152, CDH20 |
| 2 | 4.97–5.71 | 1.01 | 10 | NDUFV1, CABP4, CORO1B, PTPRCAP | |
| BF (mm) | 2 | 2.46–3.26 | 2.34 | 15 | ACTE1, SHANK2, CTTN, ANO1 |
| 0.07–0.42 | 1.46 | 5 | PSMD13, COX8H | ||
| 6.64–7.42 | 1.25 | 24 | MAP3K11 | ||
| 5 | 65.61–66.36 | 1.68 | 18 | NDUFA9, AKAP3, DYRK4, RAD51AP1,FGF6, C12orf4, TIGAR | |
| 14 | 19.67–20.42 | 1.27 | 10 | AADAT, MFAP3L, CLCN3, NEK1, SH3RF1 | |
| 18 | 6.88–7.67 | 1.27 | 28 | ZYX, FAM131B | |
| EMA (cm2) | 2 | 13.04–13.46 | 2.07 | 21 | CTNND1, BTBD18, TMX2, MED19, SERPING1 |
| 10.19–10.99 | 1.26 | 23 | DDB1, VWCE, PPAG3 | ||
| 6 | 129.64–130.41 | 1.62 | 21 | TTLL7, ADGRL2 | |
| 102.18–102.96 | 1.24 | 13 | AKAIN1, DLGAP1 | ||
| 7 | 109.35–110.14 | 1.42 | 24 | ENSSSCG00000052115, ENSSSCG00000037928 | |
| 14 | 26.65–27.30 | 1.34 | 13 | TMEM132C, ENSSSCG00000042937 | |
| 15 | 121.01–121.81 | 1.01 | 15 | CRYBA2, CFAP65, IHH |
1)
Represents the proportion of genetic variance explained by 0.8 Mb.
SSC, Sus scrofa chromosome; nSNP, number of SNP in region; AGE, days to 105 kg; ADG, average daily gain; BF, backfat thickness; EMA, eye muscle area.