Table 2.
Basic information of ATOPlex sequencing results.
| Sample ID | GAPDH reads | Spike-in control reads | SARS-CoV-2 reads | SARS-CoV-2 (copies/mL) | Relative abundance SARS-CoV-2/GAPDH | 100 ⅹ Coverage (%) | Average depth | Total mutation | Lineage ID |
|---|---|---|---|---|---|---|---|---|---|
| 2022/12/27 | 3514 | 72585 | 791966 | 9868.1 | 225.37 | 99.17 % | 2124.08 | 77 | BA.5.2 |
| 2022/12/29 | 1467 | 95434 | 867871 | 7887.21 | 591.60 | 99.42 % | 2303.02 | 80 | BA.5.2 |
| 2022/12/31 | 1029 | 54149 | 697512 | 12103.91 | 677.85 | 99.25 % | 1888.88 | 80 | BA.5.2 |
| 2023/1/2 | 940 | 44298 | 563937 | 11929.82 | 599.93 | 98.81 % | 1510.35 | 80 | BA.5.2 |
| 2023/1/4 | 1032 | 56414 | 486036 | 7379.93 | 470.97 | 98.60 % | 1288.6 | 77 | BA.5.2 |
| 2023/1/6 | 3706 | 108615 | 1204748 | 10069.89 | 325.08 | 99.09 % | 3166.26 | 77 | BA.5.2 |
GAPDH: The internal reference gene encoding human glyceraldehyde-3-phosphate dehydrogenase.