Table 1. Data collection and refinement statistics.
Crystal form… | 1 | 2 | 3 | 4 | 5 |
---|---|---|---|---|---|
Crystallization | |||||
Crystallization buffer | pH 6.3 | pH 7.4 | pH 7.0 | pH 6.6 | pH 7.9 |
0.2 M AS | 10% propan-2-ol | 0.2 M CaCl2 | 0.2 M AA | 1.2M NaCit | |
30% PEG8000 | 20% PEG4000 | 25% PEG4000 | 2.0M K/NaPi | ||
Data collection | |||||
Space group | P21 | P212121 | P3121 | P3121 | P3221 |
Unit cell (Å, °) | a=59.7, b=34.4, c=74.3; β=94.2 | a=33.8, b=59.6, c=64.3 | a=b=46.0, c=122.8 | a=b=60.2, c=87.7 | a=b=60.0, c=172.4 |
Resolution (Å) | 30.0–1.55 | 30.0–1.85 | 30.0–1.60 | 30.0–1.35 | 30.0–1.72 |
Reflections | |||||
Unique | 43301 | 11016 | 20371 | 41043 | 39263 |
Redundancy | 3.8 | 2.5 | 3.5 | 5.4 | 4.7 |
Completeness (%) | 97.9 (95.2) | 94.6 (94.8) | 98.4 (95.6) | 99.9 (99.9) | 99.6 (99.5) |
I/σ(I) | 28.7 (1.6) | 20.6 (3.1) | 21.4 (3.5) | 38.1 (3.4) | 37.6 (2.9) |
Rsym | 0.072 (0.616) | 0.068 (0.253) | 0.071 (0.323) | 0.072 (0.358) | 0.069 (0.373) |
Refinement | |||||
Resolution (Å) | 20.0–1.55 | 20.0–1.85 | 20.0–1.60 | 20.0–1.35 | 20.0–1.72 |
Reflections (number/%) | 40560/96.7 | 10471/94.9 | 20345/98.5 | 40933/99.7 | 39095/99.6 |
Test set (%) | 5 | 5 | 5 | 5 | 5 |
Rworkd | 0.235 | 0.224 | 0.187 | 0.199 | 0.217 |
Rfreed | 0.251 | 0.253 | 0.223 | 0.214 | 0.249 |
Content of a.u. | |||||
Protein molecules | 2 | 1 | 1 | 1 | 2 |
Protein atoms | 2362 | 1175 | 1196 | 1188 | 2376 |
Water atoms | 392 | 137 | 264 | 288 | 238 |
Ligands | 2 sulphate ions | 1 sulphate ion | 1 calcium ion | – | 2 citrate ions |
Mean B-factors (Å2) | |||||
Wilson | 26.2 | 27.6 | 19.4 | 19.4 | 33.3 |
Protein | 24.7 | 27.9 | 19.3 | 22.7 | 26.5 |
Water | 45.8 | 49.8 | 35.2 | 39.3 | 56.8 |
Ligands | 80.2 | 79.3 | 14.7 | – | 91.4 |
Ramachandran plot | |||||
Preferred | 0.992 | 0.984 | 0.992 | 0.992 | 1.000 |
Additions allowed | 0.8 | 0.8 | 0.8 | 0.0 | 0.0 |
Disallowed | 0.0 | 0.8 | 0.0 | 0.8 | 0.0 |
Rmsd geometry | |||||
Bond length (Å) | 0.009 | 0.010 | 0.007 | 0.008 | 0.008 |
Bond angle (°) | 1.18 | 1.02 | 1.40 | 1.27 | 1.08 |
Rmsd B-factors (Å2) | |||||
Main-chain bonds | 1.4 | 1.27 | 2.7 | 2.4 | 1.3 |
Main-chain angles | 2.2 | 2.42 | 3.3 | 3.3 | 2.2 |
Side-chain bonds | 1.6 | 3.40 | 5.3 | 4.6 | 1.5 |
Side-chain angles | 2.3 | 5.83 | 6.6 | 5.9 | 2.5 |
PDB entry | 1TZT | 1TZU | 1TZW | 1TZV | 1TZX |