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. 2024 Jul 10;169(3):613–623. doi: 10.1007/s11060-024-04763-7

Table 1.

Summary of genetic alterations detected in brain metastases and corresponding short-term cultures of five patients. The respective mutant allele frequencies are indicated in brackets

Sample ID Primary tumor entity DNA variants detected in BM tissue samples DNA variants detected in BM-derived short-term cultures
BM28 NSCLC

STK11 c.289_290 + 2delAAGT (AF = 59.6%)

TP53 c.734G > T:p.G245V (AF = 69.8%)

STK11 c.289_290 + 2delAAGT (AF = 90.5%)

TP53 c.734G > T:p.G245V (AF = 92.5%)

BM31 Melanoma

KIT c.2447 A > T:p.D816V (AF = 29.5%)

JAK3 c.2164G > A:p.V722I (AF = 50.1%)

KIT c.2447 A > T:p.D816V (AF = 31.7%)

JAK3 c.2164G > A:p.V722I (AF = 51.0%)

BM32 GC ATM c.2572T > C:p.F858L (AF = 40.8%) ATM c.2572T > C:p.F858L (AF = 44.3%)
BM35 NSCLC

FGFR3 c.1345 C > T:p.P449S (AF = 49.1%)

KRAS c.34G > T:p.G12C (AF = 50.9%)

FGFR3 c.1345 C > T:p.P449S (AF = 52.6%)

KRAS c.34G > T:p.G12C (AF = 62.8%)

BM36 ESCA JAK3 c.2152G > C:p.V718L (1st BM: AF = 31.6%; 2nd BM: AF = 36.5%) JAK3 c.2152G > C:p.V718L (AF = 47.5%)

Abbreviations: NSCLC, non-small cell lung cancer; GC, gastric cancer; ESCA: esophageal carcinoma; AF, mutant allele frequency; BM, brain metastasis