Table 3.

Main data sources (Part II).

Type	Data source	Species	RNAs	Format	API	Threshold	SI	Relation with	TI	Relation
s(i/h)RNA	ICBP siRNA128	HS, MM	147	HTML	no		P	mRNA	WR	147
	DrugBank127		4	rel	yesS		P	mRNA disease	WR M	4 6
RNA aptamer	Apta-Index129		230	rel	no		P	chemical protein	M M	77 153
	DrugBank127		2	rel/RDF	yesS		P	protein disease	M M	5 6
ASO	eSkip-Finder130	4	2,196	rel	no		P	mRNA	WR	11,778
	DrugBank127		12	rel/RDF	yesS		P	protein mRNA disease	M WR M	12 7 14
gRNA	Addgene131	29	296	HTML	no		P	gene	WR	321
lncRNA	LncBook132	HS	323,950	rel/CSV	no	validated	WR	miRNA small protein disease bio. context	WR WR M M	146,092,274 772,745 34,536 95,243
	LncRNADisease133	4	6,066	CSV	no		WR	disease	M	20,277
	LncExpDB134	HS	101,293	rel/CSV	no	pval < 0.01	WR	mRNA	WR	28,443,865
	dbEssLnc135	HS, MM	207	JSON	no		WR	bio. role bio. process	P O	207 28
	lncATLAS136	HS	6,768	CSV	no	σ ≥ 28.50	WR	cell. component	M	2,429,368
	NONCODE137	39	644,510	rel	no		WR	disease	O	32,226
	Lnc2Cancer138	HS	3,402	CSV	no		WR	disease	O	9,254
	LncRNAWiki139	HS	106,063	rel/CSV	no		WR	small protein disease bio. context cell. component gene miRNA TF bio. process mol. function chemical pathway	P M M M WR WR M M M M M	9,387 7,634 18,453 4,969 509 210 232 10,806 1,800 789 571
	LncBase140	4	21,225	rel/CSV	no	σ1 ≥ 0.7325 σ2 ≥ 2.497	WR	miRNA anatomy cell cell. component	WR M M M	4,229,539 61,905 68,355 73,069
	TANRIC141	HS	12,727	rel/CSV	no	σ ≥ 0.3	WR	disease	M	36,632
Ribozyme	Ribocentre142	1,195	21,084	rel	no		P	bio. process	M	34
	Rfam143	16	35	rel	yes		P	bio. process cell. component mol. function	O O O	8 6 22
Riboswitch	TBDB144	3,621	23,497	CSV	no		P	protein	M	23,535
	RSwitch145	50	215	rel/CSV	no		P	bact. strain	M	215
tRF & tsRNA	tRFdb146	7	863	CSV	no		P	tRNA cell	WR M	792 2,292
	tsRFun147	HS	3,940	CSV	no	FDR < 0.01	P	miRNA tRNA disease	WR WR M	45,165 46,798 4,620
	MINTbase148	HS	28,824	CSV	no		P	tRNA	WR	125,285