Table 3.
Summary of the intermolecular binding energetics of human plasma kallikrein complexes with DON and DRP-104 in relation to the reference drug, berotralstat, and phase 3 inhibitor sebetralstat, expressed in kcal/mol with standard deviations. Binding calculations were performed using the MMGBSA method with 200000 frames
| Intermolecular binding energy units (kcal/mol) | Human plasma kallikrein-ligand complex | |||
|---|---|---|---|---|
| PKa-DON | PKa-DRP-104 | PKa–Berotralstat | PKa–Sebetralstat | |
| ∆EvdW | −23.27 ± 2.67 | −41.44 ± 4.32 | −45.42 ± 4.28 | −63.87 ± 3.35 |
| ∆Eelec | −16.48 ± 11.19 | 8.25 ± 17.69 | 43.51 ± 29.43 | −39.60 ± 8.65 |
| ∆GGB | 24.68 ± 9.20 | 7.86 ± 15.57 | −23.61 ± 27.01 | 58.31 ± 7.57 |
| ∆GSA | −3.51 ± 0.13 | −5.30 ± 0.50 | −5.90 ± 0.46 | −6.81 ± 0.28 |
| ∆Ggas | −39.75 ± 10.36 | −33.19 ± 17.67 | −1.91 ± 29.66 | −103.47 ± 9.36 |
| ∆Gsolv | 21.17 ± 9.22 | 2.58 ± 15.44 | −29.50 ± 26.83 | 51.50 ± 7.41 |
| ∆Gbind | −18.58 ± 3.57 | −30.62 ± 4.75 | −31.41 ± 4.97 | −51.97 ± 3.66 |
∆Eelec (electrostatic energy), ∆EvdW (van der Waals energy), ∆Gbind (total free binding energy) ∆Ggas (gas-phase energy), ∆GGB (polar solvation energy), ∆GSA (non-polar solvation energy), and ∆Gsolv (Total solvation free energy of polar and non-polar states)