Table 1.
Expression of RNA polymerases
Sense | Family | Virus | Expression system | Construct | Composition | M.W. (kDa)a | PDB |
---|---|---|---|---|---|---|---|
Positive ssRNA | Coronaviridae | SARS-CoV-2 | BEVSb | nsp5-c nsp7- 8xHis-nsp8-nsp12d | Tetramer | 165 | 7UO4e |
MERS-CoV | nsp5- nsp7- 8xHis-nsp8-nsp12-Strep | Tetramer | 165 | n/a | |||
Picornaviridae | HRV-16 | E. coli | 8xHis-3Dpol | Monomer | 50 | 4K50 | |
EV-71 | 50 | 3N6L | |||||
Nonsegmented negative ssRNA |
Pneumoviridae | RSV | BEVS | TEV- 8xHis-P-L-Strep | Dimer | 282 | 6PZK |
HMPV | TEV- 8xHis-P- Strep-L | 267 | 6U5O | ||||
Paramyxoviridae | HPIV-3f | BEVS | p10P-pPHL-8xHis | Dimer | 323 | 8KDB | |
PIV-5f | 298 | 6V85 | |||||
Segmented negative ssRNA | Orthomyxoviridae | FluB | BEVS | TEV- 8xHis- PA-PB1- PB2-Strep | Trimer | 263 | 6QCV |
Arenaviridae | LASV | BEVS | Strep-8xHis-L | Monomer | 257 | 7OJN | |
Human DNA-dependent RNA polymerase | h-mtRNAP | BEVS | Strep-8xHis-RNAP | Monomer | 138 | 4BOC |
TEV, tobacco etch virus protease.
Molecular weight is an approximation and calculated according to the subunit composition of the replication complex (e.g. coronavirus replication complex accounts for the ratio 1:2:1 of Nsp7:Nsp8:Nsp12 as observed structurally). The protease is not included in the calculation.
Baculovirus expression vector system.
Down arrow represents the cleavage site acted on by that constructs respective protease (underlined).
Bolded domains indicate where the RdRp motifs responsible for catalyzing RNA synthesis are contained.
Ternary structure of the SARS-CoV-2 replication complex with GS-443902 in the active site as reported by Malone et al. (25).
Cloned into pFastBac-DUAL vector employing the p10 and polyhedrin (pPH) promoter as reported by Abdella at el (40).