Table 1. Summary of selected past studies.
Protein synthesis assay |
Cell cycle assay |
Medium |
Conclusion |
Citation |
---|---|---|---|---|
Metabolic labeling (rate of synthesis) |
Isopycnic (Ludox density gradient) centrifugation of live cell |
Unclear. Synthetic with and without yeast extract. |
Continuous synthesis of ribosomal proteins |
|
Metabolic labeling (rate of synthesis) |
Age fractionation by centrifugal elutriation of live cells |
Synthetic minimal |
Constant exponential increase of >100 abundant proteins |
|
Metabolic labeling (rate of synthesis) |
Age fractionation by centrifugal elutriation of live cells |
Synthetic minimal |
Constant exponential increase of ribosomal proteins |
|
Metabolic labeling (rate of synthesis) |
Isopycnic (sorbitol density gradient) centrifugation |
Synthetic minimal |
Invariant synthesis for ~700 abundant proteins |
|
Metabolic labeling (rate of synthesis) |
Isopycnic (Percoll density gradient) centrifugation of dead cells, treated with cycloheximide and sodium azide |
Synthetic minimal |
Non-exponential increase, rate peaks in the G2 phase |
|
Mass spectrometry (overall abundance) |
Release from pheromone arrest |
Rich undefined (YPD) |
The levels of most proteins did not change in the cell cycle |
|
Mass spectrometry (overall abundance) |
Centrifugal elutriation |
Rich undefined (YPD) |
The levels of most proteins did not change in the cell cycle |
|
Mass spectrometry (overall abundance) |
Release from pheromone arrest |
Synthetic minimal |
Ribosomal protein levels were the highest in the G1 phase |
|
Ribosome profiling (translational efficiency) |
Centrifugal elutriation |
Rich undefined (YPD) |
Translational control of most mRNAs did not change in the cell cycle |
|
Ribosome profiling (translational efficiency) |
Release from pheromone arrest |
Rich undefined (YPD) |
Translational control of most mRNAs did not change in the cell cycle |
|
Fluorescence microscopy (overall abundance - reporter protein) |
Unperturbed, single-cell analysis |
Synthetic complete, with glucose or glycerol/ethanol as carbon sources |
Constant exponential increase |
|
Fluorescence microscopy (overall abundance - reporter protein) |
Unperturbed, single-cell analysis |
Synthetic complete |
Linear increase |
|
Fluorescence microscopy (overall abundance - reporter protein) |
Unperturbed, single-cell analysis |
Synthetic minimal, with various carbon sources |
Dynamic, rate peaking in G1 |
|
Fluorescence microscopy (overall abundance - reporter ribosomal proteins) |
Unperturbed, single-cell analysis |
Synthetic minimal |
Dynamic, rate peaking in G1 and G2/M |
|
Fluorescence microscopy (overall abundance - reporter protein) |
Unperturbed, single-cell analysis |
Synthetic minimal |
Dynamic, rate peaking in G1 and G2/M |
|
Fluorescence microscopy (overall abundance) |
Unperturbed, single-cell analysis |
Rich undefined (YPD) |
Dynamic, proteome concentration peaks in the late G1 phase by ~30% |