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. Author manuscript; available in PMC: 2024 Aug 26.
Published in final edited form as: Cell Rep. 2024 Jul 13;43(7):114502. doi: 10.1016/j.celrep.2024.114502

KEY RESOURCES TABLE

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
c13G8 Mishra et al.28 N/A
Monoclonal anti-GP38 patient derived antibodies This paper N/A
Anti-CCHFV nucleocapsid mAb clone 9D5 BEI Resources Cat. #NR-40270
Goat anti-human Fc HRP Invitrogen Cat. #A18817
Anti-Human CD3 PerCp-Cy5.5 (clone UCHT1) BioLegend Cat. #300430; RRID: AB_893299
Anti-Human CD8 PerCp-Cy5.5 (clone SK1) BioLegend Cat. #344710; RRID: AB_2044010
Anti-Human CD14 PerCp-Cy5.5 (clone 61D3) Invitrogen Cat. #45-0149-42; RRID: AB_1518736
Anti-Human CD16 PerCp-Cy5.5 (clone B73.1) BioLegend Cat. #360712; RRID: AB_2562955
Anti-Human CD19 PE-Cy7 (clone HIB19) BioLegend Cat. #302216; RRID: AB_314246
Anti-Human CD27 BV510 (clone M-T271) BD Biosciences Cat. #740167; RRID: AB_2739920
Anti-Human IgM BV711 (clone UCH-B1) BD Biosciences Cat. #747877; RRID: AB_2872339
Anti-Human IgD BV421 (clone IA6-2) BioLegend Cat. #348226; RRID: AB_2561619
Anti-Human IgG BV605 (clone G18-145) BD Biosciences Cat. #563246; RRID: AB_2738092
Anti-human IgA DyLight® 488 (clone EPR5367-76) Abcam Cat. #ab98553; RRID: AB_10672542
Anti-human CD20 PE-Cy7 (clone 2H7) BioLegend Cat. #302311; RRID: AB_314259
Anti-human IgM AF488 (MHM-88) BioLegend Cat. # 314533; RRID: AB_2566486
Goat Anti-human Fc Antibody Jackson ImmunoResearch Cat. #109-001-008; RRID: AB_2337530
Anti-CCHFV pre-Gn mAb clone 13G8 BEI Resources Cat. #NR-40294
Anti-CCHFV pre-Gn mAb clone 7F5 BEI Resources Cat. #NR-40281
Anti-CCHFV pre-Gn mAb clone 8F10 BEI Resources Cat. #NR-40282
Goat F(ab')2 Anti-Human Kappa FITC SouthernBiotech Cat. #2062-02; RRID: AB_2795737
Goat F(ab')2 Anti-Human Lambda FITC SouthernBiotech Cat. #2072-02; RRID: AB_2795767
Anti-HA.11 Epitope Tag Antiobdy APC (clone 16B12) BioLegend Cat. #901523; RRID: AB_2734657
Goat F(ab')2 anti-human IgG PE SouthernBiotech Cat. #2042-09; RRID: AB_2795662
Bacterial and virus strains
CCHFV-IbAr10200 USAMRIID Institute stock
CCHFV-Afg09-2990 USAMRIID Institute stock
CCHFV-Turkey2004 USAMRIID Institute stock
CCHFV-Oman-199809166 USAMRIID Institute stock
Biological samples
PBMCs from CCHFV convalescent donors This paper N/A
Chemicals, peptides, and recombinant proteins
In-Fusion enzyme Takara Bio Cat. #638949
Pierce IgG elution buffer ThermoFisher Scientific Cat. #21009
Lys-C Endoproteinase ThermoFisher Scientific Cat. #90051
cOmplete Protease Inhibitor Cocktail tablet Roche Cat. #4693132001
Polyethylenimine (PEI 25K) Polysciences Cat. #23966-1
Kifunensine GlycoSyn Cat. #FC-034
rGP38 (CCHFV IbAr10200) Mishra et al.28 N/A
rGP38 (CCHFV Oman) This Paper N/A
rGP38 (CCHFV Kosova-Hoti) This Paper N/A
rGP38 (CCHFV Turkey2004) This Paper N/A
rGP38 (CCHFV Afg09) This Paper N/A
rGP38 (CCHFV M18-China) This Paper N/A
KPL Blue Sure Substrate Seracare Cat. #52-00-01
Streptactin-PE IBA Lifesciences Cat. #6-5000-001
Streptactin-APC IBA Lifesciences Cat. #6-5010-001
Propidium Iodide Invitrogen Cat. #P3566
10% NP-40 Thermo Scientific Cat. #85124
RNaseOUT Invitrogen Cat. #10777019
SuperScript III 5X First Strand Reaction Buffer ThermoFisher Scientific Cat. #18057018
SuperScript III Reverse Transcriptase ThermoFisher Scientific Cat. #18080044
HotStartTaq Plus Polymerase QIAGEN Cat. #203646
Yeast Extract-Peptone-Dextrose Medium Gietz and Woods75 N/A
Salmon Sperm DNA Invitrogen Cat. #15632011
Polyethylene Glycol 3350 Sigma Aldrich Cat. #202444
Lithium Acetate Sigma Aldrich Cat. #517992
Streptavidin Alexa Fluor 633 Invitrogen Cat. #S11223
Soluble Cytosolic Protein Xu et al.76 N/A
Soluble Membrane Protein Xu et al.76 N/A
ExtraAvidin-R-PE Sigma Cat. #E4011
Critical commercial assays
MACS B Cell Isolation Kit II, Human Miltenyi Biotec Cat. #130-091-151
Streptavidin Biosensors Sartorius Cat. #18-5021
Anti-Human IgG Fc Capture Biosensors Sartorius Cat. #18-5064
Anti-Mouse IgG Fc Capture Biosensors Sartorius Cat. #18-5090
Octet Kinetics Buffer 10x Sartorius Cat. #18-1105
GeneMorph II Random Mutagenesis Kit Agilent Cat. #200550
EZ-Link Sulfo-NHS-LC Biotin ThermoFisher Scientific Cat. #A39257
Deposited data
CCHFV IbAr10200 GP38 Mishra et al.28 PDB: 6VKF
Model of CCHFV GP38 bound to ADI-46143 Fab This Paper PDB: 8VVK
Model of CCHFV GP38 bound to c13G8 Fab This Paper PDB: 8VVL
Model of CCHFV GP38 bound to ADI-46152 and ADI-58048 Fabs This Paper PDB: 8VWW
CryoEM map of CCHFV GP38 bound to ADI-46152 and ADI-58048 Fabs This Paper EMDB: EMD-43604
CryoEM map of CCHFV GP38 bound with ADI-46143 and ADI-46158 Fabs This Paper EMDB: EMD-43551
CryoEM map of CCHFV GP38 bound with ADI-58062 and ADI-63530 Fabs This Paper EMDB: EMD-43552
CryoEM map of CCHFV GP38 bound with ADI-58026 and ADI-63547 Fabs This Paper EMDB: EMD-43553
Experimental models: Cell lines
ExpiCHO Expression System Kit Gibco Cat. #A29133
FreeStyle 293-F cells Gibco Cat. #R79007
Vero E6 ATCC Cat. #CRL-1586; RRID:CVCL_XD71
Vero ATCC Cat. #CCL-81; RRID: CVCL_0059
S. cerevisiae: Strain background: EBY100 ATCC Cat. #MYA-4941
Experimental models: Organisms/strains
Mouse: B6.129S(Cg)-Stat1tm1Dlv/J Jackson Labs Cat. #012606
Mouse: Type 1 interferon a/β receptor KO Jackson Labs RRID:MMRRC Strain 032405-JAX
Oligonucleotides
Single B Cell Primers for PCR Tiller et al.77 N/A
Recombinant DNA
Plasmid: pCAGGS-NP Zivcec et al.45 N/A
Plasmid: pCAGGS-L Zivcec et al.45 N/A
Plasmid: pCAGGS-GPC Zivcec et al.45 N/A
Plasmid: pSMART-LCK-Luc (minigenome) Zivcec et al.45 N/A
Plasmid: pCAGGS-T7 Zivcec et al.45 N/A
Software and algorithms
CCP4 Winn et al.78 RRID:SCR_007255
GraphPad Prism Software V9.5.1 GraphPad Software https://graphpad.com/
iMosflm Battye et al.79 RRID:SCR_014217
AIMLESS Evans and Murshudov80 RRID:SCR_015747
Phaser McCoy et al.81 RRID:SCR_014219
Coot Emsley and Cowtan82 RRID:SCR_01422
Phenix Adams et al.83 RRID:SCR_014224
PyMOL DeLano et al.84 RRID: SCR_000305
cryoSPARC Punjani et al.85 RRID:SCR_016501
ISOLDE Tristan Croll86 https://tristanic.github.io/isolde/
AlphaFold Protein Structure Database Varadi et al.87 RRID:SCR_023662
DeepEMhancer Sanchez-Garcia et al.88 https://github.com/rsanchezgarc/deepEMhancer
PDBePISA Krissinel and Henrick89 RRID:SCR_015749
UCSF ChimeraX Goddard et al.90 RRID:SCR_015872
FlowJo FlowJo/BD Biosciences RRID:SCR_008520
FCS Express De Novo Software RRID:SCR_016431
Fortébio Octet Data Analysis Software V11.1 Sartorius RRID:SCR_023267
Carterra LSA Kinetics Software V1.7.3055 Carterra https://carterra-bio.com/applications/kinetics-software/
Bio-Rad CFX Manager 3.1 Bio-Rad Cat. # 1845000; RRID:SCR_017251
Other
HiTrap MabSelect SuRe affinity column Cytiva Cat. #11-0034-94
CaptureSelect IgG-CH1 affinity resin ThermoFisher Scientific Cat. #194320010
Pierce Protein A Plus Agarose resin ThermoFisher Scientific Cat. #22812
HisPur Ni-NTA Resin Thermo Scientific Cat. # 88223
HiLoad 16/600 Superdex 200 column Cytivia Cat. #28-9893-35
Superdex 200 Increase 10/300 GL Cytiva Cat. #28-9909-44
CCHFV Oman-199809166 sequence UniProt Accession # A0A0U3C6Q7
CCHFV Kosova-Hoti sequence UniProt Accession #B2BSL7
CCHFV 200406546-Turkey sequence UniProt Accession # A0A0U2SQZ0
CCHFV Afg09-2990 sequence UniProt Accession #E5FEZ4
CCHFV 79121M18 sequence UniProt Accession #D4NYK3
PELCO easiGlow Glow Discharge Cleaning System Ted Pella Cat. #91000
Vitrobot Mark IV ThermoFisher Scientific N/A
Expifectamine CHO Transfection Kit ThermoFisher Scientific Cat. #A29129
Quantifoil R 1.2/1.3 300 Mesh, Cu Electron Microscopy Sciences Cat. #Q350CR1.3