Table 2. Binding of Ac-LRTQpNA and Ac-ELRTQpNA to HAV 3C.
Association rate constants kon, dissociation rate constants koff and dissociation constants KD were obtained from SPR experiments. For the kinetic analysis a Langmuir 1:1 binding model with corrections for a drifting baseline and mass transfer was applied using global fitting (experiments A and B) [35]. Analyte concentrations were: experiment A, 25, 50, 100, 250, 500, 1000 and 2000 μM; experiment B, 25, 50, 100, 250, 500, 2000 and 4000 μM. Data in experiments C and D resulted from an equilibrium analysis. The analyte concentrations were: *25, 50, 100, 250, 500, 2000, 4000, 6000 μM; †25, 50, 100, 250, 500, 2000 μM; ‡25, 50, 100, 250, 500, 2000, 4000, 8000 μM. 3000 to 4000 RU of ligand were immobilized in all cases. wt, wild-type.
| Analyte | Experiment | Ligand | kon (M−1·s−1) | koff (s−1) | KD×10−3 (M−1) | χ2 |
|---|---|---|---|---|---|---|
| Ac-LRTQ-pNA | A | |||||
| wt | 132 | 0.181 | 1.4 | 1.2 | ||
| C24S | 213 | 0.243 | 1.1 | 1.1 | ||
| C24S/C172A | 187 | 0.041 | 0.2 | 1.4 | ||
| Ac-ELRTQ-pNA | B | |||||
| wt | 35 | 0.014 | 0.4 | 2.8 | ||
| C24S | 18 | 0.035 | 1.9 | 2.8 | ||
| C24S/C172A | 37 | 0.015 | 0.4 | 2.7 | ||
| Ac-LRTQ-pNA | C | |||||
| wt* | 5.0 | 11 | ||||
| wt† | 1.8 | 3 | ||||
| C24S* | 3.9 | 7 | ||||
| C24S† | 1.8 | 2 | ||||
| C24S/C172A* | 6.4 | 11 | ||||
| C24S/C172A† | 2.6 | 5 | ||||
| Ac-ELRTQ-pNA | D | |||||
| wt‡ | 2.8 | 28 | ||||
| wt† | 1.3 | 11 | ||||
| C24S‡ | 4.3 | 54 | ||||
| C24S† | 1.0 | 18 | ||||
| C24S/C172A‡ | 5.7 | 136 | ||||
| C24S/C172A† | 0.5 | 30 |