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. 2005 Jan 7;385(Pt 2):381–388. doi: 10.1042/BJ20040844

Table 1. N-terminal amino acid sequence residues of bovine versican and aggrecan peptides derived from fresh ligament tissue and culture medium.

Deglycosylated core protein peptides from ligament explant cultures were resolved on 4–15% gradient polyacrylamide/SDS gels and electro-eluted on to PVDF sequencing membranes. The bands were cut out and subjected to N-terminal amino acid sequencing. The approx. Mr values of peptides with the corresponding yield of the first amino acid in the peptide sequence respectively are shown. ‘X’ in the amino acid sequences represents an unidentified amino acid residue.

Fresh tissue matrix peptides Culture medium peptides
Approx. Mr (×10−3) Residues Yield (pmol) Approx. Mr (×10−3) Residues Yield (pmol) Origin of peptide sequence
300 LQKVNMEK 14 >300 XQXVNMEK 6 L1QKVNMEK*
250 LQKVNMEK 2 70 XQKXNME 2
220 LQKVNMEK 2
200 XQKVNMEK 2
170 LQKVNMEK 2
140 LQKVNME 2 250 ARGSVIL 20 A374RGSVIL
220 ARGSVIL 8
220 XEVSEXD 2 V1EVSEPD
70 VEVSEPDN 19
170 GRGTIDI 3 G1481RGTIDI
140 AGEGPSGI 18 A1772GEGPSGI
80 GQRPPVXY 15 G1873RPPVTY
35 ARLEIES 13 A2048RLEIES

* Peptide sequences are based on the primary sequence of bovine versican V0 variant [34].

† Peptide sequences are based on the primary sequence of bovine aggrecan [35].