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. 2024 Aug 27;25:278. doi: 10.1186/s12859-024-05776-9

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© This is a U.S. Government work and not under copyright protection in the US; foreign copyright protection may apply 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — a, b, c. a Genotypic relationship of honey bee samples. PCA plot generated using 874 HB samples genotyped with 272 SNPs using the Fluidigm genotyping platform. The reader is encouraged to see the interactive 3D version of this figure available to download in the supplementary section as Additional file 5_3D interactive plot and on github or Additional file 5 (html interface). b PCA plot of a subset of all samples from Africa, Italy, Malta, Israel, the Iberian Peninsula, Turkey, and the Republic of Georgia demarcated as per the HB group assignation given when using reference set III. c PCA of HB samples identified as per their assignation to the A, C, M, or O groups obtained in the GeneClass2 analysis run with reference set III