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| Name | Publication | Website | Free/Paid |
|---|---|---|---|
| MaxDIA | Cox and Mann, 2008628 | MaxQuant | free |
| Skyline | MacLean et al., 2010635 | Skyline | free |
| DIA-NN | Demichev et al., 2019649 | DIA-NN | free |
| EncyclopeDIA | Searle et al., 2018652 | EncyclopeDIA | free |
| Spectronaut | Bruderer et al., 2015653 | Spectronaut | paid |
| PEAKS | Tran et al., 2018636 | PEAKS | paid |
| Scaffold DIA | Proteome Software | paid |
