Table 1.

Genomic Loci Jointly Associated With Schizophrenia and Anorexia Nervosa at conjFDR <0.05^a,*,

Locus	Chr	Lead SNP	A1	A2	Nearest Gene	Functional Category	CADD	RDB	min ChrState	BETA for SCZ	P Value for SCZ	BETA for AN	P Value for AN	ConjFDR
1	1	rs12049457	A	G	NEGR1	Intronic	1.756	5	2	0.042	1.78 × 10−6	0.058	3.29 × 10−5	0.049
2	1	rs77663034	C	T	RPL7P9	Intergenic	4.164	5	7	−0.061	1.63 × 10−4	−0.113	9.78 × 10−6	0.046
3	3	rs9878063	T	G	CELSR3	Intronic	13.260	4	4	−0.062	5.00 × 10−6	−0.135	8.77 × 10−11	0.011
4	6	rs2388334	A	G	RP11-436D23.1	ncRNA_intronic	5.756	7	5	−0.032	1.80 × 10−4	−0.056	2.82 × 10−5	0.048
5	7	rs10254364	G	A	RELN	Intergenic	2.652	6	5	−0.033	1.12 × 10−4	−0.065	1.98 × 10−6	0.041
6	8	rs4129585	A	C	TSNARE1	Intronic	6.646	/	5	0.075	5.11 × 10−18	0.0593	9.42 × 10−6	0.023
7	9	rs11795350	A	G	RP11-315I14.5	Intergenic	2.079	7	4	0.092	1.75 × 10−6	0.131	2.52 × 10−5	0.045
8	11	rs4144893	G	A	NCAM1	Intronic	1.115	7	5	−0.051	3.46 × 10−6	−0.078	4.06 × 10−6	0.013
9	12	rs4554988	G	A	SOX5	Intergenic	8.800	7	5	−0.038	1.09 × 10−5	−0.067	1.36 × 10−6	0.016
10	13	rs9546027	T	A	PTMAP5	Intergenic	2.057	7	9	0.035	1.05 × 10−4	0.062	2.31 × 10−5	0.043

^aA1, allele 1; A2, allele 2; CADD, combined annotation-dependent depletion score; Chr, chromosome; ConjFDR, conjunctional false discovery rate; minChrState, minimum chromatin state; ncRNA, noncoding RNA; RDB, RegulomeDB score; UTR, untranslated region.

*The effect sizes are provided with A2 as the reference allele.