Table 4. Number of AUG triplets and secondary-structure free energy for NAT1 5′-UTR sequences.
uAUG* | |||||
---|---|---|---|---|---|
Variant | Length | Strong | Adequate | Weak | Free energy (kcal/mol)† |
Type IIA | 166 | 1 | −47.2 | ||
Type IIB | 284 | 2 | 2 | −80.5 | |
Type IID | 550 | 1 | 4 | −167.7 | |
Type IIE | 700 | 2 | 2 | 6 | −215.6 |
* The context of the uAUG was defined according to Meijer and Thomas [30] as ‘strong’ if it contained both an A, or G, at −3 and a G at +4, ‘adequate’ if it contained either of these nucleotides, and ‘weak’ if it contained neither.
† Calculated by the method of Mathews et al. [31] using the RNAstructure software. 1 kcal=4.184 kJ.