Table 2.
Scores from compleasm for the assemblies generated as part of this study and the reference assemblies available for each species
| Single copy | Duplicated | Fragmented | Missing | |
|---|---|---|---|---|
| Brugia malayi | ||||
| Ghedin et al. (2007) reference assembly | 3,097 (98.91%) | 16 (0.51%) | 10 (0.32%) | 8 (0.26%) |
| MinION data only assembly | 3,096 (98.88%) | 17 (0.54%) | 10 (0.32%) | 8 (0.26%) |
| MinION assembly polished with Illumina data | 3,096 (98.88%) | 17 (0.54%) | 10 (0.32%) | 8 (0.26%) |
| Hybrid assembly | 3,093 (98.79%) | 17 (0.54%) | 11 (0.35%) | 10 (0.32%) |
| Trichuris trichiura | ||||
| Foth et al. (2014) reference assembly | 1,746 (55.76%) | 55 (1.76%) | 99 (3.16%) | 1,231 (39.32%) |
| Doyle et al. (2022) reference assembly | 1,746 (55.76%) | 55 (1.76%) | 99 (3.16%) | 1,231 (39.32%) |
| MinION data only assembly | 1,768 (56.47%) | 26 (0.83%) | 93 (2.97%) | 1,244 (39.73%) |
| MinION assembly polished with Illumina data | 1,768 (56.47%) | 26 (0.83%) | 94 (3.00%) | 1,243 (39.70%) |
| Hybrid assembly | 1,776 (56.72%) | 27 (0.86%) | 97 (3.10%) | 1,231 (39.32%) |
| Ancylostoma caninum | ||||
| International Helminth Genomes Consortium (2019) reference assembly | 2,657 (84.86%) | 242 (7.73%) | 146 (4.66%) | 86 (2.75%) |
| MinION data only assembly | 2,868 (91.60%) | 103 (3.29%) | 67 (2.14%) | 93 (2.97%) |
| MinION assembly polished with Illumina data | 2,865 (91.50%) | 105 (3.35%) | 69 (2.20%) | 92 (2.94%) |
| Hybrid assembly | 2,893 (92.40%) | 110 (3.51%) | 54 (1.72%) | 74 (2.36%) |
Scores are presented as number of BUSCOs recovered in each assembly followed in parentheses by proportion of the total number of nematode orthologs assessed by miniBUSCO (n = 3,131).