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. 2024 Jul 10;11(Pt 5):762–779. doi: 10.1107/S205225252400486X

Table 6. Parameters from fits to updated consensus profiles for WAXSiS models.

Website WAXSiS calculations were performed with the ‘thorough’ mode selected for greater convergence. χ2 values are calculated with the weighting √(σw2 + σexpt2) using the Compare operation within PRIMUS/Qt. WAXSiS standardly scales experimental data to the model, but here we report the constant adjustment, C, after scaling the model to the consensus data for consistency with CRYSOL, Pepsi-SAXS and FoXS (Table 4).

  Website WAXSiS Custom WAXSiS Mean error ratio
Protein χ2 C Simulation time (ps) No. of frames averaged χ2 C Simulation time (ps) No. of frames averaged Custom WAXSiS/website WAXSiS
Xylose isomerase 19.0 9.30 × 10−4 135.5 259 61.9 9.8 × 10−4 50000 5000 0.20
Urate oxidase 5.2 9.0 × 10−4 158 300 23.6 1.1 × 10−3 50000 5000 0.24
Xylanase 6.6 −1.72 × 10−3 541 1042 6.2 −3.1 × 10−4 50000 5000 0.29
Lysozyme 6.7 −4.4 × 10−4 620.5 1201 11.4 2.2 × 10−4 50000 5000 0.39
RNase A 33.0 8.1 × 10−4 690.5 1341 56.7 −8.4 × 10−5 50000 5000 0.42