Table 6. Parameters from fits to updated consensus profiles for WAXSiS models.
Website WAXSiS calculations were performed with the ‘thorough’ mode selected for greater convergence. χ2 values are calculated with the weighting √(σw2 + σexpt2) using the Compare operation within PRIMUS/Qt. WAXSiS standardly scales experimental data to the model, but here we report the constant adjustment, C, after scaling the model to the consensus data for consistency with CRYSOL, Pepsi-SAXS and FoXS (Table 4 ▸).
| Website WAXSiS | Custom WAXSiS | Mean error ratio | |||||||
|---|---|---|---|---|---|---|---|---|---|
| Protein | χ2 | C | Simulation time (ps) | No. of frames averaged | χ2 | C | Simulation time (ps) | No. of frames averaged | Custom WAXSiS/website WAXSiS |
| Xylose isomerase | 19.0 | 9.30 × 10−4 | 135.5 | 259 | 61.9 | 9.8 × 10−4 | 50000 | 5000 | 0.20 |
| Urate oxidase | 5.2 | 9.0 × 10−4 | 158 | 300 | 23.6 | 1.1 × 10−3 | 50000 | 5000 | 0.24 |
| Xylanase | 6.6 | −1.72 × 10−3 | 541 | 1042 | 6.2 | −3.1 × 10−4 | 50000 | 5000 | 0.29 |
| Lysozyme | 6.7 | −4.4 × 10−4 | 620.5 | 1201 | 11.4 | 2.2 × 10−4 | 50000 | 5000 | 0.39 |
| RNase A | 33.0 | 8.1 × 10−4 | 690.5 | 1341 | 56.7 | −8.4 × 10−5 | 50000 | 5000 | 0.42 |