Table 1. Genome data for Gadus morhua, gadMor3.0.
| Project accession data | ||
|---|---|---|
| Assembly identifier | gadMor3.0 | |
| Species | Gadus morhua | |
| Specimen | NEAC_001/fGadMor1 | |
| NCBI taxonomy ID | 8049 | |
| BioProject | PRJEB33456 | |
| BioSample ID | SAMEA5574046 | |
| Isolate information | fGadMor1 | |
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 38.6 | ≥ 40 |
| k-mer completeness | 99.56% | ≥ 95% |
| BUSCO ** | C:92.7%[S:91.8%,D:0.9%],
F:1.8%,M:5.5%,n:3,640 |
C ≥ 95% |
| Percentage of assembly
mapped to chromosomes |
97.52% | ≥ 95% |
| Raw data accessions | ||
| PacBio | ERR7254624–ERR7254628 | |
| 10X Genomics Illumina | ERR5528096–ERR5528099 | |
| Genome assembly | ||
| Assembly accession | GCA_902167405.1 | |
| Accession of alternate haplotype | GCA_902167395.1 | |
| Span (Mb) | 669.9 | |
| Number of contigs | 1,441 | |
| Contig N50 length (Mb) | 1.0 | |
| Number of scaffolds | 226 | |
| Scaffold N50 length (Mb) | 28.7 | |
| Longest scaffold (Mb) | 30.9 | |
| Genome annotation | ||
| Number of protein-coding
genes |
23,515 | |
| Number of non-coding genes | 5,339 | |
| Number of gene transcripts | 68,853 | |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from Rhie et al. (2021).
** BUSCO scores based on the actinopterygii_odb10 BUSCO set using v5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/Gadus%20morhua/dataset/CABHMC01.1/busco.