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. 2024 Jun 4;27(9):110174. doi: 10.1016/j.isci.2024.110174
REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies

Anti-CD107a BD Biosciences RRID:AB_396136
Anti-CD3 BD Biosciences RRID:AB_397038
Anti-CD16 BD Biosciences RRID:AB_396864
Anti-CD56 BD Biosciences RRID:AB_396853
Anti MIP-1β BD Biosciences RRID:AB_393549
Anti-IFNγ BD Biosciences RRID:AB_400425
Anti-guinea pig complement C3 goat IgG fraction, FITC MP Biomedicals RRID:AB_2334913
Goat anti-Mouse IgG Fc Cross-Adsorbed Secondary Antibody, PE Thermo Fischer RRID:AB_429715
Mouse Anti-rhesus IgG-PE (SB108a) Southern Biotech RRID:AB_2796071
Anti-rhesus IgG1 [7H11] NHP Reagent Resource RRID:AB_2819310
Anti-rhesus IgG2 [3C10] NHP Reagent Resource RRID:AB_2895607
Anti-rhesus IgG3 [2G11] NHP Reagent Resource RRID:AB_2819316
Anti-rhesus IgG4 [7A8] NHP Reagent Resource RRID:AB_2819322
Anti-rhesus IgA [9B9] NHP Reagent Resource RRID:AB_2819303
Anti-Secretory IgA Invitrogen RRID:AB_931432
Anti-rhesus IgM Life Diagnostics 2C11-1-5

Biological samples

LowTox Guinea Pig Complement CedarLane Labs Cat # CL4051

Chemicals, peptides, and recombinant proteins

SARS-CoV-2 WT Spike Sino Biological 40589-V08H4
SARS-CoV-2 BA1 RBD Sino Biological 40592-V08H129
SARS-CoV-2 WT S2 Sino Biological 40590-V08B
SARS-CoV-2 WT NTD Sino Biological 40591-V49H
SARS-CoV-2 Alpha Spike Sino Biological 40589-V08B6
SARS-CoV-2 Beta Spike Sino Biological 40589-V08B7
SARS-CoV-2 WT N Sino Biological 40588-V08B
SARS-CoV-2 Delta Spike Sino Biological 40589-V08B16
SARS-CoV-2 Gamma Spike Sino Biological 40589-V08B10
SARS-CoV-2 XBB1.5 Spike Sino Biological 40589-V08H45
SARS-CoV-2 BA1 Spike Sino Biological 40589-V08H26
SARS-CoV-2 HCMV gB Sino Biological 10202-V08H1
SARS-CoV-2 XBB1.16 Spike Sino Biological 40589-V08H48
SARS-CoV-2 Alpha RBD Sino Biological 40592-V08H82
SARS-CoV-2 SARS Spike Sino Biological 40634-V08B
SARS-CoV-2 Beta RBD Sino Biological 40592-V08H59
SARS-CoV-2 EG5 Spike Sino Biological 40589-V08H55
SARS-CoV-2 BA2.86 Spike Sino Biological 40589-V08H58
SARS-CoV-2 EG5 RBD Sino Biological 40592-V08H151
SARS-CoV-2 Delta RBD Sino Biological 40592-V08H91
SARS-CoV-2 Ebola Glycoprotein Sino Biological 40459-V08H
SARS-CoV-2 Gamma RBD Sino Biological 40592-V08H86
SARS-CoV-2 BA2 Spike Sino Biological 40589-V08H28
SARS-CoV-2 BA2 RBD Sino Biological 40592-V08H123
SARS-CoV-2 BA5 Spike Sino Biological 40589-V08H32
SARS-CoV-2 BA5 RBD Sino Biological 40592-V08H131
SARS-CoV-2 BQ1.1 Spike Sino Biological 40589-V08H41
SARS-CoV-2 BQ1.1 RBD Sino Biological 40592-V08H143
SARS-CoV-2 XBB1.5 RBD Sino Biological 40592-V08H146
SARS-CoV-2 XBB1.16 RBD Sino Biological 40592-V08H136
Rhesus soluble Fcγ2A-1 Duke University Custom Order
Rhesus soluble Fcγ2A-2 Duke University Custom Order
Rhesus soluble Fcy2A-3 Duke University Custom Order
Rhesus soluble Fcy2A-4 Duke University Custom Order
Rhesus soluble Fcγ3A-1 Duke University Custom Order
LC-LC-Sulfo-NHS Biotin ThermoFisher Cat # A35358
Brefeldin A Sigma Aldrich Cat #B7651
GolgiStop BD Biosciences Cat # 554724
Streptavidin-R-Phycoerythrin Prozyme Cat # PJ31S

Critical commercial assays

Fix & Perm Cell Permeabilization Kit (Medium B) ThermoFisher GAS002S100
Fix & Perm Cell Permeabilization Kit (Medium A) ThermoFisher GAS001S100
EasySep™ Direct Human Neutrophil Isolation Kit Stemcell Technologies 19666
EasySep™ Human NK Cell Isolation Kit Stemcell Technologies 17955
NHS-Sulfo-LC-LC Kit ThermoFisher 21435
Zebra-Spin Desalting and Chromatography Columns ThermoFisher 89882

Experimental models: Cell lines

THP-1 monocytes ATCC RRID: CVCL_0006
Human Primary Natural Killer Cell Leukopack StemCell 200–0092

Software and algorithms

GraphPad Prism 8 GraphPad Software, Inc. RRID:SCR_002798
iQue Forecyt 9.1 Sartorius 60028
R Studio V 6.0 R Project for Statistical Computing RRID:SCR_000432
Flow Jo BD Bioscience RRID:SCR_008520
MATLAB ver. R2019a MathWorks RRID:SCR_001622

Other

384-well HydroSpeed Plate Washer Tecan 30190112
iQue Screener Plus Intellicyt/Sartorius 11811
MagPlex Microspheres Luminex MFG MC12001-01 (Cataloged by region)
Green Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
Red Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
Scarlet Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
384-well HydroSpeed Plate Washer Tecan 30190112
MagPlex Microspheres Luminex MFG MC12001-01 (Cataloged by region)
Green Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
Red Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
Scarlet Fluorescent Neutravidin Microspheres ThermoFisher Custom Synthesis
Systems Serology Dataset GitHub BDRPM_20240422
Existing dataset including neutralizing antibody titers and viral loads McMahan et al.28