Table 1.
Data files available through the ProteomeXchange data repository (PXD052574).
| File/folder | Description | |
|---|---|---|
| 1 | Rep1_MAIT.raw | .raw file of MAIT cells – Biological Replicate 1 |
| 2 | Rep2_MAIT.raw | .raw file of MAIT cells – Biological Replicate 2 |
| 3 | Rep3_MAIT.raw | .raw file of MAIT cells – Biological Replicate 3 |
| 4 | Rep1_nonMAIT_CD3.raw | .raw file of nonMAIT CD3+ T cells – Biological Replicate 1 |
| 5 | Rep2_nonMAIT_CD3.raw | .raw file of nonMAIT CD3+ T cells - Biological Replicate 2 |
| 6 | Rep3_nonMAIT_CD3.raw | .raw file of nonMAIT CD3+ T cells – Biological Replicate 3 |
| 7 | Rep1_nonMAIT_CD8.raw | .raw file of nonMAIT CD8+ T cells – Biological Replicate 1 |
| 8 | Rep2_nonMAIT_CD8.raw | .raw file of nonMAIT CD8+ T cells - Biological Replicate 2 |
| 9 | Rep3_nonMAIT_CD8.raw | .raw file of nonMAIT CD8+ T cells – Biological Replicate 3 |
| 10 | search.zip | MaxQuant ouput files resulted from the analysis of the above .raw files against UniProt/SwissProt human reviewed proteome |
| 11 | parameters.txt | Parameters used in the data analysis through MaxQuant, MaxLFQ search engine |
| 12 | human_proteome_reviewed_25102017.fasta | UniProt/SwissProt proteome database used in the analysis |
| 13 | MaxQuant_MaxLFQ_Output_protein group file.txt | MaxQuant ouput files giving the protein quantification data and LFQ normalised protein intensities |