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. 2024 Sep 2;12:RP90851. doi: 10.7554/eLife.90851

Table 4. Summary of the simulations.

Scheme Protein system Membrane system Pulling rate (m/s) Number of replicas Length per replica (ns)
Equilibrium simulations No AQP0 Pure SM N/A 5 500
2:1 SM:Chol
1:2 SM:Chol
One AQP0 tetramer without EC lipids Pure SM 5 500
2:1 SM:Chol
1:2 SM:Chol
One AQP0 tetramer with EC lipids 2:1 SM:Chol 5 500
1:2 SM:Chol
Two AQP0 tetramers with deep cholesterol Pure SM 10 1000
Two AQP0 tetramer without deep cholesterol Pure SM
Force probe Two AQP0 tetramers with deep cholesterol Pure SM 0.1 20 replicas for each velocity ~55
0.02 ~230
0.004 ~900
Two AQP0 tetramers without deep cholesterol Pure SM 0.1 20 replicas for each velocity ~55
0.02 ~230
0.004 ~900