Table 4. Summary of the simulations.
| Scheme | Protein system | Membrane system | Pulling rate (m/s) | Number of replicas | Length per replica (ns) |
|---|---|---|---|---|---|
| Equilibrium simulations | No AQP0 | Pure SM | N/A | 5 | 500 |
| 2:1 SM:Chol | |||||
| 1:2 SM:Chol | |||||
| One AQP0 tetramer without EC lipids | Pure SM | 5 | 500 | ||
| 2:1 SM:Chol | |||||
| 1:2 SM:Chol | |||||
| One AQP0 tetramer with EC lipids | 2:1 SM:Chol | 5 | 500 | ||
| 1:2 SM:Chol | |||||
| Two AQP0 tetramers with deep cholesterol | Pure SM | 10 | 1000 | ||
| Two AQP0 tetramer without deep cholesterol | Pure SM | ||||
| Force probe | Two AQP0 tetramers with deep cholesterol | Pure SM | 0.1 | 20 replicas for each velocity | ~55 |
| 0.02 | ~230 | ||||
| 0.004 | ~900 | ||||
| Two AQP0 tetramers without deep cholesterol | Pure SM | 0.1 | 20 replicas for each velocity | ~55 | |
| 0.02 | ~230 | ||||
| 0.004 | ~900 |