Table 1.
The 30 most frequent HLA haplotypes in the Saudi population, their frequencies, estimated coverage, and the corresponding discovery sample size
| Haplotype | n | Frequency | Cumulative population coverage | Discovery sample size (IC method) | Discovery sample size (standard method) |
|---|---|---|---|---|---|
| A∗02∼B∗50∼DRB1∗07 | 3,257 | 0.035820445 | 0.070357785 | 1,163.2 | 779.4 |
| A∗02∼B∗51∼DRB1∗04 | 1,710 | 0.018817209 | 0.106290035 | 2,214.3 | 2,824.2 |
| A∗26∼B∗08∼DRB1∗03 | 1,256 | 0.01381056 | 0.13221127 | 3,017.0 | 5,243.0 |
| A∗23∼B∗50∼DRB1∗07 | 1,168 | 0.01284866 | 0.155984567 | 3,242.9 | 6,057.4 |
| A∗02∼B∗07∼DRB1∗15 | 1,073 | 0.011789139 | 0.177507021 | 3,534.3 | 7,195.1 |
| A∗01∼B∗41∼DRB1∗07 | 989 | 0.010885212 | 0.197132434 | 3,827.8 | 8,439.7 |
| A∗31∼B∗51∼DRB1∗13 | 897 | 0.009864418 | 0.214712733 | 4,223.9 | 10,276.8 |
| A∗24∼B∗08∼DRB1∗03 | 886 | 0.00973965 | 0.231879733 | 4,278.0 | 10,541.8 |
| A∗68∼B∗08∼DRB1∗03 | 789 | 0.008673389 | 0.247007651 | 4,804.0 | 13,293.0 |
| A∗33∼B∗14∼DRB1∗01 | 684 | 0.007517493 | 0.259997767 | 5,542.6 | 17,695.1 |
| A∗02∼B∗51∼DRB1∗13 | 631 | 0.006935427 | 0.271881844 | 6,007.8 | 20,790.0 |
| A∗02∼B∗51∼DRB1∗15 | 619 | 0.00678727 | 0.28341891 | 6,138.9 | 21,707.5 |
| A∗01∼B∗73∼DRB1∗10 | 582 | 0.006398224 | 0.294210309 | 6,512.2 | 24,427.6 |
| A∗02∼B∗07∼DRB1∗03 | 579 | 0.00635411 | 0.304846275 | 6,557.4 | 24,768.0 |
| A∗11∼B∗52∼DRB1∗15 | 564 | 0.006205572 | 0.315155666 | 6,714.4 | 25,967.9 |
| A∗68∼B∗50∼DRB1∗07 | 562 | 0.006184673 | 0.325353708 | 6,737.1 | 26,143.7 |
| A∗03∼B∗50∼DRB1∗07 | 555 | 0.006106359 | 0.335347563 | 6,823.5 | 26,818.6 |
| A∗33∼B∗58∼DRB1∗03 | 529 | 0.005815561 | 0.344796156 | 7,164.7 | 29,567.6 |
| A∗31∼B∗50∼DRB1∗07 | 512 | 0.005623392 | 0.353868204 | 7,409.5 | 31,623.0 |
| A∗30∼B∗42∼DRB1∗03 | 512 | 0.005620087 | 0.362871732 | 7,413.9 | 31,660.2 |
| A∗24∼B∗35∼DRB1∗11 | 489 | 0.005374934 | 0.371423421 | 7,752.0 | 34,614.2 |
| A∗31∼B∗15∼DRB1∗13 | 479 | 0.005264996 | 0.379744176 | 7,913.9 | 36,074.8 |
| A∗30∼B∗53∼DRB1∗13 | 457 | 0.005026816 | 0.387636778 | 8,288.9 | 39,574.4 |
| A∗24∼B∗15∼DRB1∗13 | 457 | 0.00502551 | 0.395476811 | 8,291.0 | 39,595.0 |
| A∗02∼B∗51∼DRB1∗16 | 430 | 0.004726393 | 0.402804117 | 8,815.7 | 44,765.2 |
| A∗68∼B∗07∼DRB1∗04 | 426 | 0.004685168 | 0.410023416 | 8,893.3 | 45,556.4 |
| A∗02∼B∗58∼DRB1∗03 | 423 | 0.004675942 | 0.417184728 | 8,910.9 | 45,736.4 |
| A∗30∼B∗13∼DRB1∗07 | 423 | 0.004654791 | 0.424270214 | 8,951.4 | 46,153.0 |
| A∗68∼B∗51∼DRB1∗11 | 414 | 0.004557838 | 0.431166128 | 9,141.8 | 48,137.4 |
| A∗01∼B∗52∼DRB1∗15 | 413 | 0.004550811 | 0.438009959 | 9,155.9 | 48,286.1 |
Complete list can be found in Table S1. n denotes the number of individuals carrying the corresponding haplotype in the cohort (Alfraih et al., 2021). IC stands for inbreeding coefficient method.