TABLE 2.
Distributions of VDR genotype and allele among TB patients and controls.
| A VDR FokI (rs2228570) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| First author reference | Case | Control | Case | Control | |||||||
| FF | Ff | Ff | FF | Ff | Ff | F | f | F | f | HWE | |
| Ates | 58 | 60 | 10 | 35 | 37 | 8 | 176 | 80 | 107 | 53 | 0.926 |
| Devi | 59 | 106 | 4 | 119 | 90 | 18 | 224 | 114 | 328 | 126 | 0.986 |
| Hidayah | 20 | 46 | 17 | 46 | 62 | 10 | 86 | 80 | 154 | 82 | 0.412 |
| Joshi | 51 | 46 | 13 | 63 | 41 | 11 | 148 | 72 | 167 | 63 | 0.539 |
| Lee | 44 | 104 | 50 | 51 | 87 | 32 | 192 | 204 | 189 | 151 | 0.893 |
| Panda | 55 | 58 | 37 | 86 | 51 | 13 | 168 | 132 | 223 | 77 | 0.410 |
| Salimi | 65 | 44 | 11 | 93 | 31 | 7 | 174 | 66 | 217 | 45 | 0.157 |
| Silva | 76 | 119 | 62 | 80 | 218 | 159 | 271 | 243 | 378 | 536 | 0.939 |
| Sinaga | 27 | 42 | 7 | 30 | 34 | 12 | 96 | 56 | 94 | 58 | 0.210 |
| Wang | 22 | 53 | 75 | 39 | 68 | 42 | 97 | 203 | 146 | 152 | 0.570 |
| Liu | 29 | 63 | 28 | 85 | 120 | 35 | 121 | 119 | 290 | 190 | 0.781 |
| Zhang | 16 | 43 | 51 | 26 | 47 | 29 | 75 | 145 | 99 | 105 | 0.576 |
| Fernandez | 34 | 47 | 12 | 26 | 60 | 16 | 115 | 71 | 112 | 92 | 0.165 |
| Jafari | 41 | 50 | 5 | 55 | 61 | 6 | 132 | 60 | 171 | 73 | 0.105 |
| Wu | 72 | 96 | 45 | 101 | 88 | 22 | 240 | 186 | 290 | 132 | 0.910 |
| Varzari | 100 | 117 | 47 | 74 | 125 | 44 | 317 | 211 | 273 | 213 | 0.784 |
| Zhang | 21 | 80 | 79 | 21 | 25 | 13 | 122 | 238 | 67 | 51 | 0.735 |
| Banoei | 30 | 21 | 9 | 29 | 27 | 6 | 81 | 39 | 85 | 39 | 0.997 |
| Kang | 30 | 58 | 15 | 41 | 43 | 21 | 118 | 88 | 125 | 85 | 0.306 |
| Marashain | 97 | 57 | 10 | 15 | 30 | 5 | 251 | 77 | 60 | 40 | 0.210 |
| Merza | 67 | 46 | 4 | 35 | 25 | 0 | 180 | 54 | 95 | 25 | 0.125 |
| Roth | 9 | 32 | 59 | 14 | 78 | 109 | 50 | 150 | 106 | 296 | 0.923 |
| B VDR BsmI (rs1544410) | |||||||||||
| First author reference | Case | Control | Case | Control | |||||||
| BB | Bb | bb | BB | Bb | bb | B | b | B | b | HWE | |
| Ates | 28 | 68 | 32 | 5 | 38 | 37 | 124 | 132 | 48 | 112 | 0.504 |
| Devi | 24 | 100 | 45 | 56 | 113 | 58 | 148 | 190 | 225 | 229 | 0.998 |
| Hidayah | 63 | 18 | 2 | 83 | 35 | 0 | 144 | 22 | 201 | 35 | 0.317 |
| Lee | 183 | 14 | 1 | 146 | 24 | 0 | 380 | 16 | 316 | 24 | 0.612 |
| Salimi | 31 | 66 | 23 | 39 | 70 | 22 | 128 | 112 | 148 | 114 | 0.609 |
| Silva | 153 | 96 | 8 | 273 | 168 | 16 | 402 | 112 | 714 | 200 | 0.274 |
| Sinaga | 0 | 52 | 24 | 2 | 18 | 56 | 52 | 100 | 22 | 130 | 0.140 |
| Rong | 137 | 101 | 20 | 188 | 86 | 17 | 375 | 141 | 462 | 120 | 0.253 |
| Jafari | 11 | 42 | 43 | 15 | 52 | 55 | 64 | 128 | 82 | 162 | 0.884 |
| Varzari | 108 | 121 | 40 | 94 | 119 | 34 | 337 | 201 | 307 | 187 | 0.931 |
| Zhang | 2 | 19 | 159 | 1 | 4 | 54 | 23 | 337 | 6 | 112 | 0.073 |
| Banoei | 13 | 27 | 20 | 31 | 26 | 5 | 53 | 67 | 88 | 36 | 0.990 |
| Kang | 2 | 13 | 135 | 0 | 8 | 75 | 17 | 283 | 8 | 158 | 0.899 |
| Merza | 7 | 67 | 43 | 13 | 21 | 26 | 81 | 153 | 47 | 73 | 0.121 |
| C VDR TaqI (rs731236) | |||||||||||
| First author reference | Case | Control | Case | Control | |||||||
| TT | Tt | tt | TT | Tt | tt | T | t | T | t | HWE | |
| Ates | 49 | 65 | 14 | 30 | 39 | 11 | 163 | 93 | 99 | 61 | 0.957 |
| Devi | 86 | 73 | 10 | 116 | 86 | 25 | 245 | 93 | 318 | 136 | 0.342 |
| Hidayah | 72 | 11 | 0 | 97 | 19 | 2 | 155 | 11 | 213 | 23 | 0.831 |
| Lee | 186 | 12 | 0 | 149 | 20 | 1 | 384 | 12 | 318 | 22 | 0.935 |
| Salimi | 52 | 54 | 14 | 67 | 50 | 14 | 158 | 82 | 184 | 78 | 0.607 |
| Silva | 132 | 110 | 15 | 228 | 199 | 30 | 374 | 140 | 655 | 259 | 0.304 |
| Wani | 54 | 42 | 4 | 60 | 33 | 9 | 150 | 50 | 153 | 51 | 0.383 |
| Delgado | 325 | 30 | 3 | 96 | 10 | 0 | 680 | 36 | 202 | 10 | 0.878 |
| Fernandez | 51 | 33 | 2 | 58 | 38 | 1 | 135 | 37 | 154 | 40 | 0.153 |
| Jafari | 38 | 46 | 12 | 56 | 58 | 8 | 122 | 70 | 170 | 74 | 0.386 |
| Zhang | 160 | 19 | 1 | 52 | 7 | 0 | 339 | 21 | 111 | 7 | 0.889 |
| Kang | 134 | 14 | 1 | 85 | 8 | 1 | 282 | 16 | 178 | 10 | 0.323 |
| Banoei | 8 | 33 | 19 | 33 | 24 | 5 | 49 | 71 | 90 | 34 | 0.977 |
| Roth | 90 | 10 | 0 | 169 | 31 | 1 | 190 | 10 | 369 | 33 | 0.992 |
| D VDR ApaI (rs7975232) | |||||||||||
| First author reference | Case | Control | Case | Control | |||||||
| AA | Aa | aa | AA | Aa | aa | A | a | A | a | HWE | |
| Devi | 36 | 83 | 50 | 49 | 103 | 75 | 155 | 183 | 201 | 253 | 0.480 |
| Hidayah | 38 | 31 | 14 | 32 | 61 | 25 | 107 | 59 | 125 | 111 | 0.910 |
| Lee | 103 | 78 | 17 | 89 | 65 | 16 | 284 | 112 | 243 | 97 | 0.718 |
| Silva | 96 | 125 | 36 | 159 | 218 | 80 | 317 | 197 | 536 | 378 | 0.718 |
| Fernandez | 27 | 42 | 20 | 29 | 54 | 18 | 96 | 82 | 112 | 90 | 0.711 |
| Jafari | 33 | 44 | 19 | 36 | 55 | 31 | 110 | 82 | 127 | 117 | 0.564 |
| Varzari | 60 | 142 | 65 | 61 | 128 | 52 | 262 | 272 | 250 | 232 | 0.613 |
| Zhang | 19 | 67 | 94 | 2 | 21 | 36 | 105 | 255 | 25 | 93 | 0.880 |
HWE, Hardy-Weinberg equilibrium.