TABLE 1.
Seegene Anyplex™ II RV16, BioFire® FilmArray® Respiratory 2.1 plus Panel, and Qiagen® QIAstat-Dx® Respiratory SARS-CoV-2 Panel targets detected, and composite reference generated for 48 respiratory samples collected in South Africa during 2021 and 2022.
| Specimen number | ARV | FARP | QRP | Repeat ARV | Composite reference |
|---|---|---|---|---|---|
| S1 | ADV | RV/EV | None | None | None |
| S2 | NL63 | NL63 | NL63 | - | NL63 |
| S3 | MPV | MPV | MPV | - | MPV |
| S4 | HRV | RV/EV | RV/EV | - | RV/EV |
| S5 | FLUA | FLUA/H1-2009 | FLUA/H1-2009 | - | FLUA |
| S6 | FLUA | ADV, FLUA/H1-2009 | FLUA | - | FLUA |
| S7 | FLUB | FLUB | FLUB | - | FLUB |
| S8 | PIV3 | PIV3 | PIV3 | - | PIV3 |
| S9 | PIV3 | PIV3 | PIV3 | - | PIV3 |
| S10 | PIV4 | PIV4 | None | PIV4 | PIV4 |
| S11 | PIV4 | PIV4 | PIV4 | - | PIV4 |
| S12 | BOCA | None | None | - | None |
| S13 | OC43 | HKU1 | HKU1 | OC43 | None |
| S14 | OC43 | OC43, RV/EV | OC43 | - | OC43 |
| S15 | RSVA | RSV | RSV | - | RSV |
| S16 | RSVA | RSV | RSV | - | RSV |
| S17 | NL63 | NL63 | None | NL63 | NL63 |
| S18 | 229E, HRV | 229E, RV/EV | RV/EV | 229E, HRV | 229E, RV/EV |
| S19 | 229E, RSVB | 229E, RV/EV, RSV | 229E, RSV | - | 229E, RSV |
| S20 | NL63 | NL63 | NL63 | - | NL63 |
| S21 | MPV | MPV | MPV | - | MPV |
| S22 | BOCA | None | None | - | None |
| S23 | HRV, HEV, PIV1, RSVA, BOCA | RV/EV, PIV1, RSV | RV/EV, PIV1, BOCA | HRV, HEV, PIV1, RSVA | RV/EV, PIV1, RSV |
| S24 | ADV, HRV, PIV2, PIV3, PIV4, BOCA | ADV, MPV, RV/EV, PIV2, PIV3, PIV4 | ADV, RV/EV, PIV3 | ADV, HRV, HEV, PIV2, PIV3, PIV4 | ADV, RV/EV, PIV2, PIV3, PIV4 |
| S25 | BOCA | PIV2 | PIV2, BOCA | - | PIV2 |
| S26 | ADV, BOCA | ADV, HKU1 | ADV | - | ADV |
| S27 | BOCA | None | None | - | None |
| S28 | FLUA | FLUA/H1-2009 | FLUA/H1-2009 | - | FLUA |
| S29 | FLUA | FLUA/H3 | FLUA/H3 | - | FLUA |
| S30 | ADV | ADV | ADV | - | ADV |
| S31 | FLUA | FLUA/H1-2009 | FLUA/H1-2009 | - | FLUA |
| S32 | MPV | MPV | MPV | - | MPV |
| S33 | MPV | ADV, MPV | ADV, MPV | - | ADV, MPV |
| S34 | PIV3 | PIV3 | PIV3 | - | PIV3 |
| S35 | FLUA | FLUA/H3 | FLUA/H3, PIV1 | - | FLUA |
| S36 | NL63 | NL63 | NL63† | - | NL63 |
| S37 | PIV4 | None | PIV4 | PIV4 | PIV4 |
| S38 | OC43 | OC43 | None | OC43 | OC43 |
| S39 | OC43 | OC43 | None | OC43 | OC43 |
| S40 | PIV2 | PIV2 | PIV2 | - | PIV2 |
| S41 | ADV, OC43, HEV, RSVB | ADV, OC43, RV/EV, RSV | ADV, OC43, RV/EV, RSV | - | ADV, OC43, RV/EV, RSV |
| S42 | HEV, FLUA, PIV4 | FLUA/H3, PIV4 | FLUA/H3 | FLUA, PIV4 | FLUA, PIV4 |
| S43 | PIV3 | RV/EV, PIV3 | PIV3 | - | PIV3 |
| S44 | OC43, MPV | OC43, MPV, RV/EV | OC43, MPV | - | OC43, MPV |
| S45 | RSVB | RSV | RSV | - | RSV |
| S46 | MPV | MPV | MPV | - | MPV |
| S47 | NL63 | NL63 | RSV | NL63 | NL63 |
| S48 | ADV | ADV | None | ADV | ADV |
229E, coronavirus 229E; ADV, adenovirus; ARV, Seegene Anyplex™ II RV16; BOCA, bocavirus; FARP, BioFire® FilmArray® Respiratory 2.1 plus Panel; FLUA, influenza A; FLUB, influenza B; HEV, human enterovirus; HKU1, coronavirus HKU1; HRV, human rhinovirus; MPV, metapneumovirus; NL63, coronavirus NL63; OC43, coronavirus OC43; PIV1, parainfluenza virus 1; PIV2, parainfluenza virus 2; PIV3, parainfluenza virus 3; PIV4, parainfluenza virus 4; QRP, Qiagen® QIAstat-Dx® Respiratory SARS-CoV-2 Panel; RSV, respiratory syncytial virus; RSVA, respiratory syncytial virus A; RSVB, respiratory syncytial virus B; RV/EV, rhinovirus/enterovirus.
, QRP repeated due to invalid run (cartridge failure).