Table 2.
Genes present in the plastid genomes of Alisma species.
| Category for genes | Group of genes | Name of genes |
|---|---|---|
| Self-replication | Ribosomal RNA genes | rrn16 a ,rrn23 a ,rrn4.5 a ,rrn5 a |
| Transfer RNA genes | trnH-GUG b ,trnQ-UUG,trnS-GCU,trnG-UCC b ,trnR-UCU,trnC-GCA,trnD-GUC,trnY-GUA,trnE-UUC,trnT-GGU,trmM-CAU,trnS-UGA,trnfM-CAU,trnS-GGA,trnT-UGU,trnL-UAA b ,trnF-GAA,trnV-UAC b ,trnW-CCA,trnP-UGG,trnP-GGG,trnL-CAU a ,trnL-CAA a ,trnV-GAC a ,trnI-GAU ab ,trnA-UGC ab ,trnR-ACG a ,trnN-GUU,trnL-UAG,trnN-GUU,trnH-CAU,trnK-UUU b | |
| Ribosome large subunit gene | rpl2 ab ,rpl14,rpl16 b ,rpl20,rpl22,rpl23 a ,rpl32,rpl33,rpl36 | |
| Ribosome small subunit gene | rps2,rps3,rps4,rps7 a ,rps8,rpsl1,rps12 ab ,rps14,rps15,rps16 b ,rps18,rps19 | |
| DNA-dependent RNA polymerase gene | rpoA,rpoB,rpoC1 b ,rpoC2 | |
| Translation initiation factor | infA | |
| Genes for photosynthesis | Subunits of photosystem I | psaA,psaB,psaC,psal,psaJ |
| Subunits of photosystem II | psbA,psbB,psbC,psbD,psbE,psbF,psbH,psbI,psbJ,psbK,psbL,psbM,psbN,psbT,psbZ | |
| Cytochrome subunits | petA,petB b ,petD b ,petG,petL,petN | |
| ATP synthase subunit | atpA,atpB,atpE,atpF b ,atpH,atpI | |
| ATP-dependent protease subunit | clpP b | |
| Rubisco large subunit | rbcL | |
| NADH dehydrogenase subunit | ndhA b ,ndhB ab ,ndhC,ndhD,ndhE,ndhF,ndhG,ndhH,ndhl,ndhJ,ndhK | |
| Other genes | Mature enzyme genes | matK |
| Envelope protein gene | cemA | |
| Subunit of Acetyl-carboxylase | accD | |
| C-type cytochrome synthesis gene | ccsA | |
| Genes of unknown function | Open reading frames (ORF, ycf) | ycfl,ycf2,ycf3 b ,ycf4 |
The “a” label after gene names reflects genes located in IR regions. Intron containing gene is indicated by “b”.