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. Author manuscript; available in PMC: 2024 Sep 4.
Published in final edited form as: J Open Source Softw. 2024;9(94):6030. doi: 10.21105/joss.06030

Figure 1:

Figure 1:

Benchmarks comparing fasten with other analogous tools. From left to right, then to bottom: Trimming with a minimum quality score; converting fastq to fasta; interleaving R1 and R2 reads; kmer counting; normalizing read depth using kmer coverage; searching for a sequence in a fastq file; downsampling reads; sorting fastq entries by either sequence or ID; and converting nonstandard fastq files to a format whose entries are four lines each, and selecting the first 100.