Table 2.

Summary of online resources for expression and regulation analysis in tumor.

Name	Description	Link
hTFtarget	Comprehensive database for human TF regulation and their targets	https://guolab.wchscu.cn/hTFtarget
JASPAR	Largest TF binding profile database across species	https://jaspar.elixir.no/
AnimalTFDB	Comprehensive database for genome-wide TFs, transcription co-factors, and chromatin remodeling factors in 183 animal genomes	https://guolab.wchscu.cn/AnimalTFDB4
Cistrome	A collection of ChIP-seq, chromatin accessibility data (DNase-seq and ATAC-seq), and regulation in human and mouse	http://cistrome.org/db
miRNASNP	Database for miRNA-related SNPs and their functions	https://guolab.wchscu.cn/miRNASNP
PEA	Platelet expression atlas resource and platelet transcriptome	https://guolab.wchscu.cn/PEA
ChIPBase	The encyclopedia of transcriptional regulations of ncRNAs and protein-coding genes	http://rna.sysu.edu.cn/chipbase/
TRRUST v2	Transcriptional Regulatory Relationships Unraveled by Sentence-based Text mining	http://www.grnpedia.org/trrust
EVAtlas	Comprehensive database for ncRNA expression in human extracellular vesicles	https://guolab.wchscu.cn/EVAtlas
EVmiRNA	Database of miRNA profiling in extracellular vesicles	https://guolab.wchscu.cn/EVmiRNA
TiGER	Tissue-specific Gene Expression and Regulation	http://bioinfo.wilmer.jhu.edu/tiger/
GeNeCK	Web server for gene network construction and visualization	https://lce.biohpc.swmed.edu/geneck/
FFLtool	Web server for TF and miRNA feed forward loop analysis in human	https://guolab.wchscu.cn/FFLtool
GRAND	Gene Regulatory Network Database	https://grand.networkmedicine.org/
GRNdb	Gene regulatory networks database	http://www.grndb.com/

ncRNA: Non-coding RNA; SNPs: Single nucleotide polymorphisms; TF: Transcription factor; TFDB: Transcription Factor Database; ATAC-seq: Assay for Transposase-Accessible Chromatin with high throughput sequencing.