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. 2024 Sep 4;11:967. doi: 10.1038/s41597-024-03778-z

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 3 — Contents of the R. pomeroyi Digital Microbe. As visualized in anvi’o ‘gene mode’, each item on the inner tree corresponds to one gene call in the R. pomeroyi genome, and the blue concentric circles display the coverage of each gene in a given transcriptome sample. The outermost red concentric circles correspond to normalized protein abundances from proteome samples (raw files available in the Proteomics Identifications Database (PRIDE) via Project PXD045824). Samples are grouped by their study of origin, with the data source indicated in text of the same color as the samples. The brown bar plot indicates the total number of reads that mapped from each transcriptome to the R. pomeroyi genome. This figure was generated from version 5.0 of the R. pomeroyi Digital Microbe databases on Zenodo.