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. 2024 Sep 4;11:967. doi: 10.1038/s41597-024-03778-z

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© The Author(s) 2024

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 5 — The Alteromonas Digital Microbe. Each concentric ring represents one Alteromonas genome, with colored rings identifying genomes from five clades of interest (A. macleodii, A. mediterranea, A. austalica, A. stellioolaris, and A. naphthalenivorans). The outermost green rings depict annotation sources applied to all genomes. Each spoke in the figure represents one gene cluster in the pangenome, with presence/absence denoted by darker/lighter colors, respectively. Genome metadata are shown next to each ring and include total genome length, GC content, completion, number of genes per kbp, and number of gene clusters per genome. The red heatmap above the metadata shows the average nucleotide identity (ANI) percentage scores between genomes. The tree above the ANI heatmap shows the imported phylogenomic tree, with clades of interest color-referenced in the circular portion of the figure. This figure was generated using the anvi’o ‘anvi-display-pan’ from a version of the Alteromonas digital microbe without singleton genes, which is available on Zenodo under 10.5281/zenodo.10421034.