TABLE 1.

Genetic diversity of Taxus cuspidata based on neutral and non‐neutral genetic variation.

		Neutral genetic variation								Non‐neutral genetic variation
		nSSRs				Neutral SNPs				F ST‐outlier SNPs				GEA‐outlier SNPs
Population	N	N A	N E	H o	H E	P	H o	H E	π	P	H o	H E	π	P	H o	H E	π
MDJHCH	15 (8)	4.14	2.48	0.39	0.48	0.79	0.27	0.28	0.30	0.86	0.18	0.19	0.21	0.77	0.27	0.32	0.34
MDJS	15 (8)	4.14	2.34	0.36	0.44	0.78	0.25	0.30	0.32	0.77	0.16	0.30	0.33	0.77	0.25	0.31	0.33
HCM	15 (8)	3.43	1.90	0.29	0.40	0.80	0.26	0.27	0.30	0.81	0.31	0.25	0.27	0.75	0.29	0.33	0.35
MDJHP	15 (7)	3.57	2.17	0.38	0.43	0.80	0.24	0.26	0.29	0.87	0.15	0.17	0.18	0.78	0.25	0.29	0.31
YBD	15 (8)	3.57	2.13	0.42	0.46	0.79	0.28	0.29	0.31	0.80	0.29	0.29	0.31	0.76	0.31	0.32	0.34
YBHG	15 (8)	3.00	1.90	0.29	0.34	0.78	0.31	0.30	0.32	0.84	0.23	0.22	0.24	0.76	0.34	0.32	0.35
YBJ	5 (4)	2.29	1.71	0.46	0.34	0.81	0.31	0.26	0.30	0.88	0.19	0.17	0.20	0.79	0.33	0.28	0.33
YJX	15 (8)	2.57	1.58	0.26	0.29	0.78	0.30	0.30	0.32	0.83	0.23	0.23	0.25	0.76	0.31	0.32	0.35
YBHS	4 (4)	2.14	1.73	0.39	0.34	0.79	0.28	0.27	0.33	0.84	0.20	0.21	0.26	0.77	0.30	0.29	0.35
YBHSP	6 (6)	3.14	2.21	0.36	0.39	0.80	0.28	0.27	0.31	0.75	0.26	0.32	0.35	0.76	0.32	0.31	0.36
LJD	7 (7)	2.71	2.23	0.31	0.47	0.79	0.26	0.29	0.31	0.77	0.29	0.32	0.34	0.77	0.27	0.31	0.34
LJB	5 (4)	2.43	1.71	0.43	0.34	0.79	0.32	0.28	0.32	0.79	0.30	0.29	0.33	0.77	0.37	0.31	0.36
BSSCZ	5 (5)	2.29	1.94	0.26	0.28	0.81	0.27	0.26	0.29	0.85	0.21	0.21	0.24	0.77	0.33	0.31	0.35
THL	10 (8)	2.57	1.72	0.30	0.34	0.78	0.30	0.30	0.33	0.71	0.34	0.38	0.40	0.75	0.30	0.34	0.36
Mean		2.99	1.98	0.35	0.38	0.79	0.28	0.28	0.31	0.81	0.24	0.25	0.28	0.77	0.30	0.31	0.34

Abbreviations: N, number of individuals used for nSSRs and RAD‐seq in parentheses; N _A, No. of different alleles and N _E, effective number of alleles; H _o and H _E, observed and expected heterozygosity; P, mean frequency of the most frequent allele at each locus; π, mean nucleotide diversity.