TABLE 2.
Hierarchical analyses of molecular variance (AMOVA) of Taxus cuspidata populations based on all SNPs, neutral and non‐neutral genetic variation.
| Source of variation | df | Percentage of variation (%) | Fixation indices |
|---|---|---|---|
| All SNPs | |||
| Among groups | 13 | 6.6 | |
| Within populations | 172 | 93.4 | F ST = 0.07 |
| Neutral genetic variation | |||
| nSSRs | |||
| Among groups | 18 | 7.5 | |
| Within populations | 381 | 92.5 | F ST = 0.07 |
| Neutral SNPs | |||
| Among groups | 13 | 7.2 | |
| Within populations | 172 | 92.8 | F ST = 0.07 |
| Non‐neutral genetic variation | |||
| F ST‐outlier SNPs | |||
| Among groups | 13 | 38.5 | |
| Within populations | 172 | 79.1 | F ST = 0.32 |
| GEA‐outlier SNPs | |||
| Among groups | 13 | 10.3 | |
| Within populations | 172 | 89.7 | F ST = 0.10 |
Note: Significance tests (1000 permutations) showed all fixation indices were significant (p < 0.05).
Abbreviation: df, degree of freedom.