Table 1.
Abundance | SCFA | BAs | Trp | BCAAs | TMA | Ref. | |
---|---|---|---|---|---|---|---|
PHYLUM | |||||||
Proteobacteria | ↑ | – | – | – | – | + | 39,40 |
Bacteroidetes | ↓ | + | + | + | – | + | 40 |
FAMILY | |||||||
Enterobacteriaceae | – | – | – | – | – | – | |
Ruminococcaceae | ↑ | – | + | + | – | – | |
GENUS | |||||||
Akkermansia | ↓ | + | – | + | – | – | 41–43 |
Alistipes | ↓ | + | – | + | – | – | 44 |
Bacteroides | ↓ | + | + | + | + | – | 45–49 |
Clostridium | ↓ | + | + | + | – | + | 40,45,50–52 |
Collinsella | ↓ | + | – | – | – | – | 53 |
Faecalibacterium | ↓ | + | – | – | + | – | 54–56 |
Parabacteroides | ↓ | + | – | – | – | – | 57 |
Paraprevotella | ↓ | – | – | – | – | – | |
Prevotella | ↓ | + | – | – | + | – | 58,59 |
Ruminococcus | ↓ | + | + | + | + | + | 60–66 |
A plus sign in the table indicates that the given bacteria are involved in the metabolism of the specified metabolites (in the case of bile acids, in the conversion of primary bile acids to secondary bile acids). References indicate that the bacteria in question are involved in the metabolism of the specified metabolites.
(SCFA – short-chain fatty acids, BAs – bile acids, Trp – tryptophan derivatives, BCAAs – branch-chained amino acids, TMA - trimethylamine).