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. 2024 Aug 6;16(8):e66332. doi: 10.7759/cureus.66332

Table 1. The PC properties of 15 proteins using the ProtParam free web server.

mNeph: mouse nephrin; hNeph: human nephrin; hMMP 2: human matrix metalloproteinase 2; hMMP 9: human matrix metalloproteinase 9; hRBP 3: human retinol-binding protein 3; hRBP 4: human retinol-binding protein 4; hKLK 1: human kallikrein 1; hUromodulin: human uromodulin; hIGFBP 7: human insulin-like growth factor binding protein 7; hCystatin C: human cystatin C; hPodocin: human podocin; hBeta arrestin 1: human beta arrestin 1; hVANGL2: human vang-like protein 2; hDynamin 1: human dynamin 1; hTENC1: human tensin-like C1 domain-containing phosphatase; MW: molecular weight of protein; P1: theoretical isoelectric point of protein; NR: total number of negatively charged residues present in the protein; PRׁ: total number of positively charged residues present in the protein; Ext.co1: extinction coefficient assuming all pairs of Cys residues form cystines; Ext.co2: extinction coefficient assuming all Cys residues are reduced; GRAVY*: grand average of hydropathicity of the protein; PC: physicochemical

Proteins MW P1 NR PRׁ Ext.co1 Ext.co2 Instability index Aliphatic index GRAVY*
mNeph 1180.4 6.75 1 1 - - 58.29 146.00 0.520
hNeph 134742.2 5.42 139 106 166490 165240 46.04 86.74 -0.246
hMMP 2 17936.9 4.85 25 14 32430 - 15.46 69.75 -0.461
hMMP 9 17911.9 5.12 22 10 33920 - 27.70 77.50 -0.281
hRBP 3 15781.0 5.97 20 17 24075 23950 30.16 86.42 -0.484
hRBP 4 21225.8 5.27 28 24 34295 33920 33.50 65.35 -0.592
hKLK 1 26405.6 4.62 34 13 46575 45950 39.66 79.79 -0.229
hUromodulin 76456.7 5.60 82 67 96230 95230 24.75 78.94 -0.258
hIGFBP7 50266.4 7.62 47 49 46390 43890 41.44 53.58 -0.443
hCystatin C 13333.1 8.75 12 15 11710 11460 45.63 64.17 -0.507
hPodocin 42200.9 8.95 45 51 24325 23950 53.38 93.47 -0.170
hBeta arrestin-1 47051.6 5.84 66 59 19495 19370 36.26 86.67 -0.515
hVANGL2 59714.5 9.27 61 72 67060 66810 48.41 90.36 -0.297
hDynamin 1 39333.0 5.89 48 43 10555 10430 40.62 97.45 -0.310
hTENC1 17191.5 9.18 12 16 14105 13980 46.52 72.10 -0.315