Fig. 2.

Usage metrics of DIA analysis tools between 2010 and 2023.A, annual number of citations of each primary manuscript as indexed by Google Scholar. B, annual co-occurrence of “SoftwareTool” with “proteomics” and either “DIA” or “SWATH” in PMC literature searches (in the case of EncyclopeDIA, “Searle” was additionally used in the co-occurrence search, which probably leads to an underrepresentation). DIA, data-independent acquisition; PMC, PubMed Central; SWATH, sequential window acquisition of all theoretical fragment ion spectra.