Table 1. Genome data for Lochmaea crataegi, icLocCrat2.1.
| Project accession data | ||
|---|---|---|
| Assembly identifier | icLocCrat2.1 | |
| Species | Lochmaea crataegi | |
| Specimen | icLocCrat2 | |
| NCBI taxonomy ID | 1143063 | |
| BioProject | PRJEB57666 | |
| BioSample ID | SAMEA110451579 | |
| Isolate information | icLocCrat2, male: whole organism (DNA sequencing)
icLocCrat1, whole organism (Hi-C scaffolding) |
|
| Assembly metrics * | Benchmark | |
| Consensus quality (QV) | 60.4 | ≥ 50 |
| k-mer completeness | 100.0% | ≥ 95% |
| BUSCO ** | C:98.6%[S:97.2%,D:1.5%],
F:0.4%,M:1.0%,n:2,124 |
C ≥ 95% |
| Percentage of assembly mapped to chromosomes | 98.32% | ≥ 95% |
| Sex chromosomes | XY | localised homologous pairs |
| Organelles | Mitochondrial genome: 18.32 kb | complete single alleles |
| Raw data accessions | ||
| PacificBiosciences SEQUEL II | ERR10499355 | |
| Hi-C Illumina | ERR10501013 | |
| Genome assembly | ||
| Assembly accession | GCA_947563755.1 | |
| Accession of alternate haplotype | GCA_947563735.1 | |
| Span (Mb) | 891.3 | |
| Number of contigs | 738 | |
| Contig N50 length (Mb) | 2.8 | |
| Number of scaffolds | 136 | |
| Scaffold N50 length (Mb) | 53.0 | |
| Longest scaffold (Mb) | 139.76 | |
* Assembly metric benchmarks are adapted from column VGP-2020 of “Table 1: Proposed standards and metrics for defining genome assembly quality” from Rhie et al. (2021).
** BUSCO scores based on the endopterygota_odb10 BUSCO set using version 5.3.2. C = complete [S = single copy, D = duplicated], F = fragmented, M = missing, n = number of orthologues in comparison. A full set of BUSCO scores is available at https://blobtoolkit.genomehubs.org/view/CANOBC01/dataset/CANOBC01/busco.