Table 1.
Characteristics of calcium-dependent protein kinases (CDPKs) in cotton
| Gene name | Gene ID | Chr | Amino acid | MW (kDa) | PI | EF hands | N-terminal aa | N-myristoylation | Subcellular localization |
|---|---|---|---|---|---|---|---|---|---|
| GhCDPK1 | CotAD_21360 | At11 | 587 | 65.54 | 5.41 | 4 | MGNTCVG | No | Nucleus |
| GhCDPK2 | CotAD_33841 | sca | 573 | 64.03 | 5.87 | 3 | MGNTCVG | No | Nucleus |
| GhCDPK3 | CotAD_45432 | Dt1 | 579 | 64.64 | 5.77 | 4 | MGNTCVG | No | Nucleus |
| GhCDPK4 | CotAD_53506 | At12 | 605 | 67.32 | 5.66 | 4 | MGNACAG | No | Nucleus |
| GhCDPK5 | CotAD_34786 | At9 | 540 | 60.67 | 6.10 | 4 | MNKKIAG | No | Nucleus |
| GhCDPK6 | CotAD_05939 | Dt5 | 508 | 56.84 | 5.48 | 4 | MNNQSSS | No | Nucleus |
| GhCDPK7 | CotAD_36560 | At3 | 511 | 57.14 | 5.48 | 4 | MNNQSSS | No | Nucleus |
| GhCDPK8 | CotAD_66485 | sca | 568 | 63.62 | 5.78 | 4 | MGNTCRG | No | Nucleus |
| GhCDPK9 | CotAD_13019 | At8 | 607 | 67.88 | 5.76 | 3 | MGNTCRG | No | Nucleus |
| GhCDPK10 | CotAD_28390 | Dt12 | 552 | 61.94 | 5.26 | 4 | MGNTCRG | No | Nucleus |
| GhCDPK11 | CotAD_50659 | Dt2 | 648 | 71.66 | 5.32 | 4 | MGNVCAT | No | Nucleus |
| GhCDPK12 | CotAD_17127 | At6 | 610 | 68.28 | 5.16 | 4 | MGNNCFK | No | Nucleus |
| GhCDPK13 | CotAD_12120 | Dt13 | 487 | 54.63 | 5.06 | 4 | MRRAIDH | No | Nucleus |
| GhCDPK14 | CotAD_33393 | At13 | 523 | 58.56 | 6.51 | 3 | MGNTCLR | No | Nucleus |
| GhCDPK15 | CotAD_12430 | At9 | 532 | 59.52 | 5.38 | 4 | MGNLCSR | No | Nucleus |
| GhCDPK16 | CotAD_47701 | Dt8 | 534 | 60.25 | 5.98 | 3 | MGNCNSQ | Yes | Nucleus |
| GhCDPK17 | CotAD_70650 | sca | 538 | 60.51 | 5.28 | 4 | MGNCCSR | Yes | Nucleus |
| GhCDPK18 | CotAD_16448 | Dt1 | 513 | 57.31 | 5.27 | 4 | MGNCCSR | Yes | Nucleus |
| GhCDPK19 | CotAD_65954 | At3 | 519 | 58.60 | 5.62 | 3 | MGNCNGL | No | Nucleus |
| GhCDPK20 | CotAD_49677 | At6 | 523 | 58.55 | 5.69 | 4 | MGNCCSC | Yes | Nucleus |
| GhCDPK21 | CotAD_13649 | Dt6 | 524 | 58.57 | 5.44 | 4 | MGNCCSC | Yes | Nucleus |
| GhCDPK22 | CotAD_41076 | Dt9 | 524 | 58.82 | 5.98 | 4 | MGGCLTK | Yes | Nucleus |
| GhCDPK23 | CotAD_54795 | sca | 527 | 58.76 | 5.84 | 4 | MGNCCTR | No | Nucleus |
| GhCDPK24 | CotAD_73088 | sca | 537 | 60.46 | 6.14 | 4 | MGSCLTK | Yes | Nucleus |
| GhCDPK25 | CotAD_26791 | Dt11 | 583 | 64.87 | 5.40 | 4 | MGNTCVG | No | Nucleus |
| GhCDPK26 | CotAD_48046 | Dt12 | 600 | 66.47 | 5.48 | 4 | MGNVCAT | No | Nucleus |
| GhCDPK27 | CotAD_42895 | Dt12 | 593 | 65.99 | 5.44 | 4 | MGNACAG | No | Nucleus |
| GhCDPK28 | CotAD_56181 | Dt5 | 568 | 63.54 | 5.72 | 4 | MGNTCRG | No | Nucleus |
| GhCDPK29 | CotAD_33390 | At13 | 487 | 54.62 | 5.06 | 4 | MRRAIDH | No | Nucleus |
| GhCDPK30 | CotAD_31563 | Dt6 | 610 | 68.19 | 5.13 | 4 | MGNNCFK | No | Nucleus |
| GhCDPK31 | CotAD_34973 | At8 | 655 | 73.42 | 6.04 | 3 | MGNTCRG | No | Nucleus |
| GhCDPK32 | CotAD_34966 | At8 | 655 | 73.42 | 6.04 | 3 | MGNTCRG | No | Nucleus |
| GhCDPK33 | CotAD_12121 | Dt13 | 570 | 63.63 | 5.93 | 2 | MGNTCLG | No | Nucleus |
| GhCDPK34 | CotAD_16744 | Dt9 | 502 | 56.38 | 5.46 | 4 | MNKKIA | No | Nucleus |
| GhCDPK35 | CotAD_67913 | Dt1 | 513 | 57.26 | 5.27 | 4 | MGNCCTR | Yes | Nucleus |
| GhCDPK36 | CotAD_04751 | At4 | 527 | 58.72 | 6.09 | 4 | MGNCCTR | No | Nucleus |
| GhCDPK37 | CotAD_54317 | Dt9 | 532 | 59.51 | 5.38 | 4 | MGNLCSR | Yes | Nucleus |
| GhCDPK38 | CotAD_07025 | At2 | 537 | 60.54 | 6.06 | 4 | MGTCLTK | Yes | Nucleus |
| GhCDPK39 | CotAD_44026 | Dt8 | 550 | 62.29 | 6.60 | 3 | MGNCCAT | Yes | Nucleus |
| GhCDPK40 | CotAD_20538 | Dt6 | 531 | 60.23 | 6.32 | 2 | MGNCCVT | No | Nucleus |
| GhCDPK41 | CotAD_34534 | Dt1 | 506 | 56.85 | 6.06 | 2 | MGNCCAT | No | Nucleus |
| GhCDPK42 | CotAD_16484 | Dt1 | 529 | 59.39 | 6.96 | 2 | MGNCCAT | No | Nucleus |
| GhCDPK43 | CotAD_72552 | Dt13 | 536 | 60.42 | 5.98 | 4 | MGGCLTK | Yes | Nucleus |
| GhCDPK44 | CotAD_48692 | sca | 531 | 59.69 | 5.37 | 4 | MGNCCSR | Yes | Nucleus |
| GhCDPK45 | CotAD_13610 | Dt6 | 531 | 59.85 | 6.03 | 4 | MGNCCAT | No | Nucleus |
| GhCDPK46 | CotAD_20042 | At6 | 531 | 59.86 | 6.17 | 4 | MGNCCAT | No | Nucleus |
| GhCDPK47 | CotAD_13386 | Dt9 | 517 | 58.35 | 5.69 | 4 | MGICQSL | No | Nucleus |
| GhCDPK48 | CotAD_39468 | sca | 526 | 59.24 | 5.98 | 4 | MGLCQSL | Yes | Nucleus |