Table 3:

Functional enrichments within clusters of similarly expressed DEGs.

Cluster	U6475-ULMD4	I6475-ILDM4	I17938-ILDM4	I6475-U6475	ILDM4-ULDM4	Cell adhesion	Cell fate	Hormone secretion	Mucus	Nutrient response	Signaling	Stress/Immune response
1	−	+		+	+	0.454	0.793	0.094 *	NA	0.542	0.001 **	1
2	−	−	−	+	+	0.064 *	0.879	0.879	0.231	0.542	0.542	0.454
3	+	+	+	+	+	NA	0.82	0.454	NA	0.82	0.879	0.021 *
4	+			−		NA	0.106	NA	NA	0.542	0.399	0.655
5	+	+	+	−	−	NA	0.542	0.064 *	NA	0.283	NA	0.454
6	−			−	−	NA	0.454	0.769	NA	0.037 *	NA	0.399
7		−	−	−	−	0.231	0.454	0.879	0.064 *	0.879	0.542	0.542
8		−				NA	0.283	0.769	0.086 *	NA	0.772	0.399

Clusters are listed as in Supplemental Figure 4. Columns U6475-ULDM4 through ILDM4-ULDM4 summarize whether genes within that cluster are predominantly up (+) or down (−) regulated for the given comparison. FDR corrected significance values for functional groups:

^*,q<0.1

^**,q<0.01

^***,q<0.001.