Table 3. Software tools: versions and sources.
| Software tool | Version | Source |
|---|---|---|
| BlobToolKit | 4.0.7 | https://github.com/blobtoolkit/blobtoolkit |
| BUSCO | 5.3.2 | https://gitlab.com/ezlab/busco |
| FreeBayes | 1.3.1-17-gaa2ace8 | https://github.com/freebayes/freebayes |
| gEVAL | N/A | https://geval.org.uk/ |
| Hifiasm | 0.15.3 | https://github.com/chhylp123/hifiasm |
| HiGlass | 1.11.6 | https://github.com/higlass/higlass |
| Long Ranger
ALIGN |
2.2.2 |
https://support.10xgenomics.com/genome-
exome/software/pipelines/latest/advanced/other- pipelines |
| MBG | - | https://github.com/maickrau/MBG |
| Merqury | MerquryFK | https://github.com/thegenemyers/MERQURY.FK |
| PretextView | 0.2 | https://github.com/wtsi-hpag/PretextView |
| purge_dups | 1.2.3 | https://github.com/dfguan/purge_dups |
| YaHS | yahs-1.1.91eebc2 | https://github.com/c-zhou/yahs |