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Core genome SNP phylogeny (midpoint rooted) of 186 publicly available H. pylori genomes and three newly sequenced H. pylori genomes. Colors indicate the continent of origin for the H. pylori isolates included in the tree. The blue box highlights the three newly sequenced isolates (408F, 412F, and 427F) and closely related isolates. The three newly sequenced isolates are closely related to isolates collected from Indigenous or Mestizo individuals presenting with gastritis in Mexico.
