REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Antibodies | ||
Anti-FLAG | Millipore | Cat#MAB3118; RRID: AB_11213007 |
Anti-B7-H5/VISTA | Cell Signaling | Cat#64953; RRID: AB_2799671 |
Anti-GAPDH | Santa Cruz Biotechnology | Cat#sc-32233; RRID: AB_627679 |
Goat anti-mouse 800 | Li-Cor | Cat#926-32210; RRID: AB_621842 |
Goat anti-rabbit 680 | Li-Cor | Cat#926-68071; RRID: AB_10956166 |
Anti-mouse Alexa Fluor 488 | Thermo Scientific | Cat#A-11001; RRID: AB_2534069 |
Anti-rabbit Alexa Fluor 546 | Thermo Scientific | Cat#A-11060; RRID: AB_2534107 |
Bacterial and virus strains | ||
E. coli DH5alpha | Thermo Scientific | 18265017 |
Biological samples | ||
Tissue microarray containing ccRCC and metastasis specimens | Cruces Hospital | NA |
Critical commercial assays | ||
CellTiter 96® AQueous One Solution Cell Proliferation Assay (MTS) | Promega | G3581 |
CellTiter-Glo® 3D Cell Viability Assay | Promega | G9683 |
Experimental models: Cell lines | ||
HEK293 | ATCC | CRL-1573 |
COS-7 | ATCC | CRL-1651 |
786-O | ATCC | CRL-1932 |
Caki-1 | ATCC | HTB-46 |
Oligonucleotides | ||
Primer B7-H5 N49A Forward GTCCCGAGGGGCAGGCCGTCACCCTCACCTG |
Life Technologies | A1561-2 |
Primer B7-H5 N49A Reverse CAGGTGAGGGTGACGGCCTGCCCCTCGGGAC |
Life Technologies | A1561-2 |
Primer B7-H5 N91A Forward CCGGCCCATCCGCGCCCTCACGTTCCAGG |
Life Technologies | A1561-2 |
Primer B7-H5 N91A Reverse CCTGGAACGTGAGGGCGCGGATGGGCCGG |
Life Technologies | A1561-2 |
Primer B7-H5 N108A Forward GCCACCAGGCTGCCGCCACCAGCCACGACCT |
Life Technologies | A1561-2 |
Primer B7-H5 N108A Reverse AGGTCGTGGCTGGTGGCGGCAGCCTGGTGGC |
Life Technologies | A1561-2 |
Primer B7-H5 N128A Forward CCGACCACCATGGCGCCTTCTCCATCACCAT |
Life Technologies | A1561-2 |
Primer B7-H5 N128A Reverse ATGGTGATGGAGAAGGCGCCATGGTGGTCGG |
Life Technologies | A1561-2 |
Primer B7-H5 N135A Forward CATCACCATGCGCGCCCTGACCCTGCTGG |
Life Technologies | A1561-2 |
Primer B7-H5 N135A Reverse CCAGCAGGGTCAGGGCGCGCATGGTGATG |
Life Technologies | A1561-2 |
Primer B7-H5 N190A Forward CCAGGATAGTGAAGCCATCACGGCTGCAG |
Life Technologies | A1561-2 |
Primer B7-H5 N190A Reverse CTGCAGCCGTGATGGCTTCACTATCCTGG |
Life Technologies | A1561-2 |
Primer removing DYK/Flag Forward CCAAACTTTGAGGTCATCTGATAAACCCGCTGATCA |
Life Technologies | A1561-2 |
Primer removing DYK/Flag Reverse TGATCAGCGGGTTTATCAGATGACCTCAAAGTTTGG |
Life Technologies | A1561-2 |
Recombinant DNA | ||
pcDNA3.1/C-DYK/Flag B7-H5 | GenScript | NM_022153.1 |
Software and algorithms | ||
GEPIA http://gepia.cancer-pku.cn |
Peking University | RRID:SCR_018294 |
NetNGlyc http://www.cbs.dtu.dk/services/NetNGlyc/ |
CBS Prediction Servers | RRID:SCR_001570 |
Odessey Image Studio http://www.licor.com/bio/products/software/image_studio_lite/ |
Li-Cor | RRID:SCR_013715 v.4.0.21 software |
ZEN Microscopy software https://www.zeiss.com/microscopy/en/products/software/zeiss-zen.html |
ZEISS | RRID:SCR_013672 |
GraphPad Prism http://www.graphpad.com/ |
GraphPad | RRID:SCR_002798 |
SPSS Statistics http://www-01.ibm.com/software/uk/analytics/spss/ |
IBM | RRID:SCR_002865 v.29 software |
Other | ||
DMEM | Corning | Cat#10-017-CV |
RPMI 1640 medium | Corning | Cat#10-040-CV |
McCoy’s 5A medium | Corning | Cat#10-050-CV |
FBS | Gibco | Cat#A5256701 |
L-Glutamine | Lonza | Cat#BE17-605E |
Penicilin/Streptomycin | Lonza | Cat#DE17-602E |
GenJet | SignaGen | Cat#SL100489 |
PBS | Corning | Cat#21-040-CV |
M-PER lysis buffer | Thermo Scientific | Cat#78501 |
PhosStop | Roche | Cat#04 906 837 001 |
cOmplete protease inhibitor | Roche | Cat#04 693 132 001 |
PNGase F | New England Biolabs | Cat#P0704S |
NuPAGE sample buffer | Thermo Scientific | Cat#NP0008 |
Prestained molecular marker | Sigma Aldrich | Cat#SDS7B2 |
Immobilon ®-FL PVDF Membrane | Merck | Cat# IPFL00010 |
Odyssey Blocking Buffer | Li-Cor | Cat# 927-70001 |
Mounting fluid with DAPI | Abcam | Cat# ab104139 |
PepMute | SignaGen | Cat#SL100566 |
siRNAs (siB7-H5#1–4) | Qiagen | Cat#1027416 |
dNTPs | Thermo Scientific | R0193 |
DpnI | Thermo Scientific | ER1701 |
Pwo | Roche | PWOPOL-RO |
OWL HEP-1 transfer system | Thermo Scientific | Cat#HEP-1 |
Odyssey CLx Imager | Li-Cor | Cat#9140-09 |
ZEISS LSM880 AIRYSCAN | Zeiss | RRID:SCR_020925 |
AriaMx Real-Time PCR System | Agilent Technologies | Cat#G8830A |
Mark™ Microplate Absorbance Reader | Bio-Rad | Cat#168-1130 |
Infinite® M plex | Tecan | Cat# 30190085 |
PTLink | Agilent Technologies | Cat#PT100 |
Dako Autostainer Link 48 | Agilent Technologies | Cat#AS480 |