Table 1.
Models used for pangenome analysis. For α > 1 (γ < 0), the size of the pangenome approaches a constant as more genomes are sampled, that is, the pangenome is closed. Conversely, for α < 1 (0 < γ < 1), the size of the pangenome is an increasing and unbounded function of the number of genomes considered
Core genome size | Pangenome size | New genes | Comments | |||
---|---|---|---|---|---|---|
Tettelin et al. (2005) |
|
Calculated based on parameters for new genes curve |
|
|||
Tettelin et al. (2008) |
n = κN γ The exponent γ > 0 indicates an open pangenome species |
n = κN −α The exponent α determines whether the pangenome is open (α < 1) or closed (α > 1) |
There is a relationship between α and γ: α = 1−γ |