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. 2015 Nov 23;14(4):1099–1105. doi: 10.1111/pbi.12499

Table 1.

Models used for pangenome analysis. For α > 1 (γ < 0), the size of the pangenome approaches a constant as more genomes are sampled, that is, the pangenome is closed. Conversely, for α < 1 (0 < γ < 1), the size of the pangenome is an increasing and unbounded function of the number of genomes considered

Core genome size Pangenome size New genes Comments
Tettelin et al. (2005)
n=κCexp[N/τC]+Ω
Calculated based on parameters for new genes curve
n=κSexp[N/τS]+tg(θ)
Tettelin et al. (2008)

n = κN γ

The exponent γ > 0 indicates an open pangenome species

n = κN α

The exponent α determines whether the pangenome is open (α < 1) or closed (α > 1)

There is a relationship between α and γ: α = 1−γ