Add additional rows as needed for each resource type
|
Include species and sex when applicable. |
Include name of manufacturer, company, repository, individual, or research lab. Include PMID or DOI for references; use “tdis paper” if new. |
Include catalog numbers, stock numbers, database IDs or accession numbers, and/or RRIDs. RRIDs are highly encouraged; search for RRIDs at https://scicrunch.org/resources. |
Include any additional information or notes if necessary. |
Chemical Compound or Drug
|
VU0467154 (5-amino-3,4-dimethyl-N-(4-((trifluoromethyl)sulfonyl)benzyl)thieno[2,3-c]- pyridazine-6-carboxamide) |
Provided by Craig Lindsley (Vanderbilt University) |
N/A |
|
Commercial Assay Or Kit
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RNeasy Plus Mini Kit |
Qiagen |
Cat No. 74136 |
|
|
SureSelect Strand - Specific RNA Library Preparation kit for Illumina |
Aligent |
Cat No. G9691A |
|
|
SuperScriptII qRT-PCR kit |
Invitrogen |
Cat No. 10928042 |
|
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SYBR Powerup PCR kit |
Qiagen |
Cat No. 4368702 |
|
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RNAscope Multiplex Fluorescent Reagent Kit |
Advanced Cell Diagnostics |
Cat No. 320850 |
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Deposited Data; Public Database
|
Basic Local Alignment Search Tool |
https://blast.ncbi.nlm.nih.gov/Blast.cgi
|
N/A |
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Organism/Strain
|
Male inbred Indiana preferring (iP) rats |
Parental stock from the late Professor T.K. Li (while at Indiana University, USA). |
N/A |
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Sequence-Based Reagent
|
Primers for RT-qPCR, see Table S6
|
This paper |
N/A |
|
Sequence-Based Reagent
|
drd1 RNAscope probe |
Advanced Cell Diagnostics |
Cat No. 317031 |
|
Sequence-Based Reagent
|
chat RNAscope probe |
Advanced Cell Diagnostics |
Cat No. 430111-C3 |
|
Sequence-Based Reagent
|
chrm4 RNAscope probe |
Advanced Cell Diagnostics |
Cat No. 456671-C2 |
|
Software; Algorithm
|
Subjunc aligner |
- http://subread.sourceforge.net/
|
version 1.4.4 - http://subread.sourceforge.net/
|
|
Software; Algorithm
|
EdgeR |
https://www.bioconductor.org/packages/release/bioc/html/edge.html
|
version edgeR_3.4.2 in R studio, R version 3.0.2 - |
|
Software; Algorithm
|
BioMart |
https://bioconductor.org/packages/release/bioc/html/biomaRt.html
|
version 3.10 |
|
Software; Algorithm
|
Partek Genomics suite |
https://www.partek.com/partek-genomics-suite/
|
version 6.16.0419 |
|
Software; Algorithm
|
qbase+ |
https://www.qbaseplus.com/
|
version 3.0 |
|
Software; Algorithm
|
Primer3 |
http://bioinfo.ut.ee/primer3-0.4.0/
|
version 0.4.0 |
|
Software; Algorithm
|
GraphPad Prism |
https://www.graphpad.com/
|
version 7 & 8 |
Software; Algorithm
|
Image J |
NIH |
version 2.0.0 |
|
Software; Algorithm
|
MEDPC-IV |
Med Associates |
version 4 |
|