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. Author manuscript; available in PMC: 2024 Sep 12.
Published in final edited form as: Apert Neuro. 2024 Mar 8;4:10.52294/001c.94384. doi: 10.52294/001c.94384

Table 1:

Common fslmaths commands to spatially smooth (-s), spatially filter (-kernel), demean (-Tmean) and temporally filter (-bptf) a 3D (t1) or 4D (rest) image from the Human Connectome Project with a laptop using an Intel i5-8259u (28w) CPU. The ‘Time‘ column reports the time for fslmaths to complete (in seconds). The ‘Speed Up‘ column reports the acceleration relative to fslmaths (e.g. 2.0 means that niimath completed in half the time it took fslmaths).

Command Time (sec) Speed Up
fslmaths rest -s 2.548 out 270 5
fslmaths t1 -kernel boxv 7 -dilM out 216 245
fslmaths rest -Tmean -mul -1 -add rest out 101 2.5
fslmaths rest -bptf 77 8.68 out 998 2