Table 1.
TBP and TAF genes in the mungbean genome.
| Name | Gene | Locus ID | NCBI Protein | NCBI mRNA | Location | Length (aa) | pI | M.W. (kDa) | Predicted Cell Localizations |
|---|---|---|---|---|---|---|---|---|---|
| VrTBP | Vradi0305s00090.1 | LOC106754936 | XP_014492490.1 | XM_014637004.2 | NW_014543812.1 (24061..29626, complement) | 200 | 9.68 | 22.38 | Nucleus |
| VrTAF1 | Vradi11g07970.1 | LOC106777544 | X1:XP_014520632.1 X2:XP_014520633.1 X3:XP_014520634.1 X4:XP_022631751.1 |
X1:XM_014665146.2 X2:XM_014665147.2 X3:XM_014665148.2 X4:XM_022776030.1 |
Chr 11, NC_028361.1 (8353773..8377433) | 1901 1767 1752 1746 |
5.62 6.40 6.98 6.90 |
215.26 200.48 198.72 197.99 |
Nucleus |
| VrTAF2 | Vradi07g18120.1 | LOC106768217 | X1:XP_014508704.1 X2:XP_022639382.1 X3:XP_022639383.1 |
X1:XM_014653218.2 X2:XM_022783661.1 X3:XM_022783662.1 |
Chr 7, NC_028357.1 (39566756..39586448) | 1384 1354 939 |
6.23 6.41 6.26 |
156.59 153.22 106.88 |
Nucleus |
| VrTAF4b | Vradi06g14750.1 | LOC106764661 | X1:XP_014504463.1 X2:XP_014504464.1 X3:XP_014504465.1 X4:XP_014504466.1 X5:XP_014504467.1 X6:XP_014504469.1 X7:XP_022638246.1 |
X1:XM_014648977.2 X2:XM_014648978.2 X3:XM_014648979.2 X4:XM_014648980.2 X5:XM_014648981.2 X6:XM_014648983.2 X7:XM_022782525.1 |
Chr 6, NC_028356.1 (34643049..34655243) | 936 936 936 936 932 845 845 |
8.38 8.38 8.38 8.38 8.38 9.39 9.39 |
101.74 101.74 101.74 101.74 101.33 92.01 92.01 |
Nucleus |
| VrTAF5–1 | Vradi06g13500.1 | LOC106765332 | X1:XP_022638193.1 X2:XP_014505399.1 |
X1:XM_022782472.1 X2:XM_014649913.2 |
Chr 6, NC_028356.1 (32613390..32624024, complement) | 659 658 |
6.37 6.37 |
72.96 72.82 |
Nucleus |
| VrTAF5–2 | Vradi05g10920.1 | LOC106762344 | XP_014501696.1 | XM_014646210.2 | Chr 5, NC_028355.1 (19815499..19824598, complement) | 671 | 6.30 | 74.27 | Nucleus |
| VrTAF6–1 | Vradi04g10770.1 | LOC106758550 | XP_014496955.1 | XM_014641469.2 | Chr 4, NC_028354.1 (19764236..19770172) | 543 | 6.30 | 60.42 | Nucleus |
| VrTAF6–2 | Vradi10g02250.1 | LOC106775101 | XP_014517632.1 | XM_014662146.2 | Chr 10, NC_028360.1 (6707871..6712998) | 536 | 7.31 | 59.80 | Nucleus |
| VrTAF6–like | / | LOC111240733 | XP_022632040.1 | XM_022776319.1 | NW_014541992.1 (22204..24055) | 192 | 5.49 | 21.37 | Nucleus |
| VrTAF7 | Vradi06g12480.1 | LOC106763916 | (1)XP_014503580.1 (2)XP_022638147.1 |
(1)XM_014648094.2 (2)XM_022782426.1 |
Chr 6, NC_028356.1 (30127567..30130853) | 199 | 4.60 | 22.22 | Nucleus |
| VrTAF8–1 | Vradi04g09290.1 | LOC106759260 | XP_022635899.1 | XM_022780178.1 | Chr 4, NC_028354.1 (18214406..18217173) | 406 | 5.55 | 44.92 | Nucleus |
| VrTAF8–2 | Vradi06g06010.1 | LOC106764373 | XP_014504145.1 | XM_014648659.2 | Chr 6, NC_028356.1 (7592855..7594847, complement) | 290 | 9.22 | 32.59 | Nucleus |
| VrTAF8–like | Vradi08g07170.1 | LOC106769930 | XP_014511223.1 | XM_014655737.2 | Chr 8, NC_028358.1 (18416509..18418289, complement) | 350 | 5.97 | 38.49 | Nucleus |
| VrTAF9–1 | Vradi06g02960.1 | LOC106764413 | X1:XP_014504185.1 X2:XP_014504186.1 |
X1:XM_014648699.2 X2:XM_014648700.2 |
Chr 6, NC_028356.1 (3016606..3019713, complement) | 189 175 |
4.49 4.48 |
21.32 19.68 |
Nucleus |
| VrTAF9–2 | Vradi07g24390.1 | LOC106767081 | XP_014507387.1 | XM_014651901.2 | Chr 7, NC_028357.1 (47737783..47740700, complement) | 177 | 5.08 | 20.20 | Nucleus |
| VrTAF10 | Vradi04g11480.1 | LOC106758746 | (1)XP_014497210.1 (2)XP_014497209.1 |
(1)XM_014641724.2 (2)XM_014641723.2 |
Chr 4, NC_028354.1 (20649254..20652967, complement) | 136 | 5.16 | 15.26 | Nucleus |
| VrTAF11 | Vradi09g05150.1 | LOC106773625 | XP_014515833.1 | XM_014660347.2 | Chr 9, NC_028359.1 (7507755..7510113) | 204 | 7.04 | 23.07 | Nucleus |
| VrTAF12 | Vradi08g05550.1 | LOC106772695 | (1)XP_014514733.1 (2)XP_014514734.1 (3)XP_022640289.1 |
(1)XM_014659247.2 (2)XM_014659248.2 (3)XM_022784568.1 |
Chr 8, NC_028358.1 (12062609..12070416) | 504 | 10.12 | 53.02 | Nucleus |
| VrTAF12b | Vradi09g02430.1 | LOC106774141 | XP_014516496.2 | XM_014661010.2 | Chr 9, NC_028359.1 (2520168..2532650) | 1064 | 8.58 | 116.82 | Nucleus |
| VrTAF13 | Vradi08g10630.1 | LOC106770840 | (1)XP_014512148.1 (2)XP_022640670.1 (3)XP_022640669.1 (4)XP_014512151.1 (5)XP_014512149.1 (6)XP_014512150.1 |
(1)XM_014656662.2 (2)XM_022784949.1 (3)XM_022784948.1 (4)XM_014656665.2 (5)XM_014656663.2 (6)XM_014656664.2 |
Chr8, NC_028358.1 (28680758..28685336, complement) | 136 | 5.31 | 15.32 | Nucleus |
| VrTAF14b–1 | Vradi11g06360.1 | LOC106777003 | XP_022631586.1 | XM_022775865.1 | Chr11, NC_028361.1 (6305127..6307465) | 279 | 6.07 | 31.27 | Chloroplast, Nucleus |
| VrTAF14b–2 | Vradi0393s00050.1 | LOC106780520 | XP_014524308.1 | XM_014668822.2 | NW_014542625.1 (46546..49945) | 273 | 7.17 | 30.73 | Nucleus |
| VrTAF15–1 | Vradi02g02560.1 | LOC106777580 | XP_014520706.1 | XM_014665220.2 | Chr2, NC_028352.1 (2396952..2402492, complement) | 390 | 8.28 | 43.21 | Nucleus |
| VrTAF15–2 | Vradi05g09940.1 | LOC106760812 | XP_014499728.1 | XM_014644242.2 | Chr5, NC_028355.1 (18244440..18246193) | 156 | 8.78 | 17.08 | Nucleus |
| VrTAF15b–1 | Vradi0153s00320.1 | LOC106752587 | XP_014489787.1 | XM_014634301.2 | NW_014542917.1 (751087..753754, complement) | 422 | 9.00 | 43.30 | Chloroplast |
| VrTAF15b–2 | Vradi0158s00270.1 | LOC106752498 | XP_022632845.1 | XM_022777124.1 | NW_014542914.1 (178992..183259) | 524 | 8.92 | 51.08 | Nucleus |