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Principal component analysis of matrix C (Eq. 4) calculated from 560 structures of WIN 52084 from the biased simulation with α = 0.0001 kcal/mol·Å4. The plot shows components of the two eigenvectors (PC1 and PC2) with the largest eigenvalues. The stars are colored according to simulation time: red, 0–64 ps; yellow, 64–3,480 ps; green, 3,480–4,032 ps; blue, 4,032–4,480 ps.
