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. 2005 May 13;102(21):7559–7564. doi: 10.1073/pnas.0502754102

Table 2. Energetics of the alignment between μ and E in solution.

Structural class
Average dipole energy* 〈-(μ·E)〉, kcal·mol-1
Average field 〈|E|〉, kcal·mol-1·e-1·Å-1
Neutral BEM§ Neutral BEM§
α -1.11 (-4.72) -1.28 (-4.97) 2.52 (5.28) 2.89 (5.52)
β -0.42 (-1.47) -0.45 (-1.53) 1.12 (1.96) 1.24 (2.00)
Λ -0.19 (-1.98) -0.29 (-2.18) 3.45 (4.84) 3.79 (5.05)

The set of 22 proteins listed in Table 1 was used for these computations.

*

Values were computed as (1/N) ΣiN (-|μi(ri)||Ei(ri)| cos θi), with N being the number of μs contained in the particular structural class (values of N for the α, β, and Λ classes are 266, 119, and 636, respectively). In each column, two values are listed for each structural class; the first one corresponds to calculations with the ECEPP/3 charge set, the second one, in parentheses, corresponds to calculations with the PARSE charge set. The average values of μ are 0.54 eÅ and 1.07 eÅ, (1eÅ = 4.8 Debye) for the ECEPP and PARSE sets, respectively.

Values were computed as (1/N) ΣiN|Ei(ri)|. See item * for additional explanation.

Values were computed assuming a neutral charge distribution.

§

Values were computed assuming the BEM charge distribution.