. Author manuscript; available in PMC: 2024 Sep 17.

Published in final edited form as: Nat Protoc. 2023 Nov 23;19(2):487–516. doi: 10.1038/s41596-023-00914-8

Table 8 ∣.

An example of the ‘summary_coverage.csv’ file

Sample ID	No. total bases in aligned data^a	No. bases in the reference genome covered by a min. depth of
Sample ID	No. total bases in aligned data^a	20×	15×	10×	5×	1×
LZBC01B1^b	91,148,877,023	1,790,601,190	2,116,261,277	2,430,865,011	2,686,213,358	2,820,884,367
LZBC01B2^b	87,353,451,553	1,645,030,218	1,970,657,709	2,310,831,238	2,621,406,394	2,807,940,655
LZBC01B3^b	91,506,866,980	1,739,792,848	2,063,011,469	2,385,735,441	2,661,458,027	2,815,446,172
LZBC01B4^b	83,416,723,257	1,550,224,661	1,885,944,822	2,249,341,364	2,592,982,296	2,803,939,071
LZBC01BB^c	69,274,174,573	2,208,462,812	2,613,799,770	2,762,866,918	2,821,643,386	2,844,741,054

Dividing this value by the number of bases in the reference genome is the average sequencing depth across the genome.

Examples of scWGS data.

An example of bulk WGS data.