Table 4.

Classification of repeat elements in Thrips tabaci genome.

Repeat types		Number	Length (bp)	Percent (%)
Retroelement	DIRS	1	73	0	12.40
	LINE	20,517	4,663,532	1.41
	SINE	1,809	223,456	0.07
	LTR/Copia	6,199	3,260,579	0.99
	LTR/ERV	1,533	210,523	0.06
	LTR/Gypsy	31,415	14,185,724	4.30
	LTR/Ngaro	334	26,769	0.01
	LTR/Pao	195	15,106	0
	LTR/Unknown	118,446	18,271,408	5.54
DNA transposon	Academ	102	60,099	0.02	13.24
	CACTA	1,044	89,800	0.03
	Crypton	249	47,534	0.01
	Dada	21	1,156	0
	Ginger	117	6,997	0
	Helitron	120,799	17,559,717	5.33
	IS3EU	38	3,155	0
	Kolobok	134	16,700	0.01
	Maverick	482	229,551	0.07
	Merlin	3	152	0
	Mutator	10	1,274	0
	P	2	45	0
	PIF-Harbinger	80	30,609	0.01
	PiggyBac	87	32,058	0.01
	Sola	17	2,881	0
	Tc1-Mariner	159	12,005	0
	Unknown	99,195	25,342,075	7.69
	Zator	41	18,447	0.01
	Zisupton	61	3,487	0
	hAT	1,375	174,669	0.05
Unknown		42	8,351	0
srpRNA		5	1,455	0
Tandem repeat	Microsatellite (1–9 bp units)	175,172	4,548,089	1.38	9.22
	Minisatellite (10–99 bp units)	119,995	9,614,460	2.92
	Satellite (> = 100 bp units)	11,590	16,241,158	4.93
Total		711,269	114,903,094	34.86