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. Author manuscript; available in PMC: 2024 Sep 21.
Published in final edited form as: Methods Enzymol. 2024 Jun 29;704:199–232. doi: 10.1016/bs.mie.2024.05.023

Fig. 5.

Fig. 5

Left: RMSD Cα atoms of MD simulated AsqJ structure (relative to AsqJ crystal structure, PDB ID: 6K0E) during 300 ns production MD trajectories. Right: Structure overlay of MD simulated AsqJ structure in the presence of 2-H (wheat color) and the corresponding X-ray crystal structure (multi-color, PDB ID: 6K0E, (Li et al., 2020)). The figure highlights the overlay of the 2-H in the MD structure (wheat color) and in the crystal structure (green color).