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HDE-like motif distribution across the human genome (hg38)
| HDE-like motifs present in the genome | HDE-like motifs embedded in all repeats | HDE-like motifs embedded in HERVs | HDE-like motifs embedded in LTR12s | |
|---|---|---|---|---|
| Number | 21 168 | 16 890 | 14 449 | 11 685 |
| Relative to the genome | 100% | 79.79% | 68.26% | 55.20% |
| Relative to repeats | 100% | 85.55% | 69.18% | |
| Relative to HERVs | 100% | 80. 87% |
The analysis encompasses 15 nucleotide HDE-like motifs (with sequence presented in Figure 2D) with 0, 1 or 2 mismatches allowed.
